The crucial role of theoretical approaches in studying evolutionary processes in biosystems is now well recognized. Indeed, even Charles Darwin, although himself not being a mathematician, derived his revolutionary ideas using theoretical methodology [4]. Combining mathematical modelling with empirical studies can provide a good understanding of the underlying biosystem which is unobtainable by means of laboratory experiments and field observations alone (for few recent examples see references in [14]). On the other hand, the number of publications in literature on modelling biological evolution is tremendously large and is constantly growing each year: it is rather hard to deal with such an immense flux of information.The main aim of the current Special Issue is to provide a useful guide to important recent findings and developments in few key areas of the modelling of biological evolution. This Special Issue addresses the following topics in particular: (i) the origin of genetic diversity in populations and communities; (ii) dynamics of replicator equations; (iii) evolution of biological macromolecules; (iv) evolutionary population ecology and (v) evolution and adaptation of animal behaviour and strategies. It is important to emphasize that the individual contributions to the Issue are not limited to one of the mentioned areas but rather combine several of them, so it may be hard to assign a particular paper to a single topic. Finally, most of the studies presented here are actually papers from the international conference "Modelling Biological Evolution" (MBE 2013), which was hold in Leicester, UK in May 2013. This conference brought together a number of mathematicians and empiricists with the key objective of creating stimulating discussions and productive debates between them.Understanding the mechanisms of genetic diversity (both within a single population and in ecological communities) has been the central topic in modelling biological evolution since the revolutionary work of Charles Darwin on the origin of species. In their study, Bessonov et al.[1] revisit the famous evolutionary diagram suggested by Darwin showing patterns of species creation [4]. Bessonov et al. provide a novel mathematical interpretation of this diagram and show how it can be reproduced using a set of generic mathematical models of reaction-diffusion type. The authors argue that to correctly reproduce Darwin's diagram, one needs to take into account local, nonlocal and global competition of interacting species in the hypothetic space of the phenotype. They also argue that the coefficients describing interaction of species in this space should be not constant but phenotype-dependent as well as time-dependent.