Studies showed that SARS-CoV-2 can directly target the kidney and induce renal damage. As the cell surface receptor for SARS-CoV-2 infection, the angiotensin-converting enzyme 2 (ACE2) plays a pivotal role for renal physiology and function. Thus, it is important to understand ACE2 through which pathway influences the pathogenesis of renal damage induced by COVID-19. In this study, we first performed an eQTL mapping for
Ace2
in kidney tissues in 53 BXD mice strains. Results demonstrated that
Ace2
is highly expressed and strongly controlled by a genetic locus on chromosome 16 in the kidney, with six genes (
Dnase1
,
Vasn
,
Usp7
,
Abat
,
Mgrn1
, and
Rbfox1
) dominated as the upstream modulator, as they are highly correlated with
Ace2
expression. Gene co-expression analysis showed that
Ace2
co-variates are significantly involved in the renin-angiotensin system (RAS) pathway which acts as a reno-protector. Importantly, we also found that
Ace2
is positively correlated with
Pdgf
family members, particularly
Pdgfc
, which showed the most association among the 76 investigated growth factors. Mammalian Phenotype Ontology enrichment indicated that the cognate transcripts for both
Ace2
and
Pdgfc
were mainly involved in regulating renal physiology and morphology. Among which,
Cd44
,
Egfr
,
Met
,
Smad3
, and
Stat3
were identified as hub genes through protein–protein interaction analysis. Finally, in aligning with our systems genetics findings, we found
ACE2
,
pdgf
family members, and
RAS
genes decreased significantly in the CAKI-1 kidney cancer cells treated with S protein and receptor binding domain structural protein. Collectively, our data suggested that ACE2 work with RAS, PDGFC, as well as their cognate hub genes to regulate renal function, which could guide for future clinical prevention and targeted treatment for COVID-19–induced renal damage outcomes.
Key messages
• Ace2 is highly expressed and strongly controlled by a genetic locus on chromosome 16 in the kidney.
• Ace2 co-variates are enriched in the RAS pathway.
• Ace2 is strongly correlated with the growth factor Pdgfc.
• Ace2 and Pdgfc co-expressed genes involved in the regulation of renal physiology and morphology.
• SARS-CoV-2 spike glycoprotein induces down-regulation of Ace2, RAS, and Pdgfc.
Supplementary Information
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