Abstract:Because it is indicative of reproductive isolation, the amount of genetic introgression across secondary contact zones is increasingly considered in species delimitation. However, patterns of admixture at range margins can be skewed by the regional dynamics of hybrid zones. In this context, we posit an important role for phylogeographic history: hybrid zones located within glacial refugia (putatively formed during the Late-Pleistocene) should be better defined than those located in post-glacial or introduced r… Show more
“…Variation in the extent of introgression between replicate transects is often interpreted as differences in the strength of reproductive isolation, in respect to genetic and ecological factors, or a combination of both (Harrison & Larson, 2016). Based on observations between cryptic tree frog taxa, Dufresnes, Berroneau, et al (2020) proposed that hybrid zones from glacial refugia could be narrower than those from post-glacial or introduced ranges, as they presumably had more time to reach a selection-dispersal equilibrium and promote pre-mating barriers via reinforcement. Genetic incompatibilities emerging independently within single species can also differentially affect the outcome of hybridization (Barnard-Kubow & Galloway, 2017).…”
Section: Discussionmentioning
confidence: 99%
“…Based on observations between cryptic tree frog taxa, Dufresnes, Berroneau, et al. (2020) proposed that hybrid zones from glacial refugia could be narrower than those from post‐glacial or introduced ranges, as they presumably had more time to reach a selection‐dispersal equilibrium and promote pre‐mating barriers via reinforcement. Genetic incompatibilities emerging independently within single species can also differentially affect the outcome of hybridization (Barnard‐Kubow & Galloway, 2017).…”
Section: Discussionmentioning
confidence: 99%
“…As such, hybrid zone analyses have become useful models for speciation (Harrison, 1993), phylogeographical (Avise, 2000) and systematic studies (Dufresnes, Pribille, et al., 2020). However, hybrid zones can expand, collapse or become isolated from parental ranges, resulting in wide admixture or narrow tension zones for the same species pair (Dufresnes, Berroneau, et al., 2020). For instance, hybridization events during post‐glacial range expansions have left traces of introgression over extensive geographical areas (Wielstra & Arntzen, 2012; Wielstra, Burke, Butlin, Avcı, et al., 2017).…”
Aim-The amount of gene flow between parapatric species can be greatly variable depending on how species boundaries are maintained in respect to numerous genetic and ecological factors that affect the strength of reproductive isolation. We quantified this variability to understand its effect on the genetic integrity of a well-studied pair of hybridizing amphibians. Location-Central and Eastern Europe Taxa-The fire-and yellow-bellied toads Bombina bombina and B. variegata. Methods-We first complemented the mitochondrial phylogeography of European Bombina by barcoding additional populations and built MaxEnt species distribution models to identify the routes of post-glacial colonization that led to hybrid zone formation. Second, we targeted the areas of parapatry in Poland and Ukraine to assess nuclear admixture by population genetics (PCA, Bayesian clustering) of allozyme and genomic markers (RAD-seq). Third, we harvested the rich Bombina literature to thoroughly compare the extent of geographic introgression across eleven transitions altogether, using cline analyses when possible. Results-We found sharp (2-11km wide) but leaky transitions (geographically extensive traces of introgression) in all parapatric areas, either measured from a few allozymes or thousands of speciesdiagnostic SNPs, and irrespective of the intraspecific lineages involved or the relative ages since first contact. Main conclusion-Bombina species are permeable to gene flow despite selection against hybrids that retards but cannot ultimately prevent putatively neutral introgression into the parental gene pools. Although local hybrid swarms face genetic assimilation, the species' integrities remain intact due to their large geographic ranges and ecological differentiation that enforces tight boundaries regardless of the biogeographic attributes of the contacts. Opposing the great variability of introgression patterns found between cryptic species, these results support that gene flow should not be viewed as a force of despeciation when reproductive isolation involves multiple intrinsic and extrinsic barriers.
“…Variation in the extent of introgression between replicate transects is often interpreted as differences in the strength of reproductive isolation, in respect to genetic and ecological factors, or a combination of both (Harrison & Larson, 2016). Based on observations between cryptic tree frog taxa, Dufresnes, Berroneau, et al (2020) proposed that hybrid zones from glacial refugia could be narrower than those from post-glacial or introduced ranges, as they presumably had more time to reach a selection-dispersal equilibrium and promote pre-mating barriers via reinforcement. Genetic incompatibilities emerging independently within single species can also differentially affect the outcome of hybridization (Barnard-Kubow & Galloway, 2017).…”
Section: Discussionmentioning
confidence: 99%
“…Based on observations between cryptic tree frog taxa, Dufresnes, Berroneau, et al. (2020) proposed that hybrid zones from glacial refugia could be narrower than those from post‐glacial or introduced ranges, as they presumably had more time to reach a selection‐dispersal equilibrium and promote pre‐mating barriers via reinforcement. Genetic incompatibilities emerging independently within single species can also differentially affect the outcome of hybridization (Barnard‐Kubow & Galloway, 2017).…”
Section: Discussionmentioning
confidence: 99%
“…As such, hybrid zone analyses have become useful models for speciation (Harrison, 1993), phylogeographical (Avise, 2000) and systematic studies (Dufresnes, Pribille, et al., 2020). However, hybrid zones can expand, collapse or become isolated from parental ranges, resulting in wide admixture or narrow tension zones for the same species pair (Dufresnes, Berroneau, et al., 2020). For instance, hybridization events during post‐glacial range expansions have left traces of introgression over extensive geographical areas (Wielstra & Arntzen, 2012; Wielstra, Burke, Butlin, Avcı, et al., 2017).…”
Aim-The amount of gene flow between parapatric species can be greatly variable depending on how species boundaries are maintained in respect to numerous genetic and ecological factors that affect the strength of reproductive isolation. We quantified this variability to understand its effect on the genetic integrity of a well-studied pair of hybridizing amphibians. Location-Central and Eastern Europe Taxa-The fire-and yellow-bellied toads Bombina bombina and B. variegata. Methods-We first complemented the mitochondrial phylogeography of European Bombina by barcoding additional populations and built MaxEnt species distribution models to identify the routes of post-glacial colonization that led to hybrid zone formation. Second, we targeted the areas of parapatry in Poland and Ukraine to assess nuclear admixture by population genetics (PCA, Bayesian clustering) of allozyme and genomic markers (RAD-seq). Third, we harvested the rich Bombina literature to thoroughly compare the extent of geographic introgression across eleven transitions altogether, using cline analyses when possible. Results-We found sharp (2-11km wide) but leaky transitions (geographically extensive traces of introgression) in all parapatric areas, either measured from a few allozymes or thousands of speciesdiagnostic SNPs, and irrespective of the intraspecific lineages involved or the relative ages since first contact. Main conclusion-Bombina species are permeable to gene flow despite selection against hybrids that retards but cannot ultimately prevent putatively neutral introgression into the parental gene pools. Although local hybrid swarms face genetic assimilation, the species' integrities remain intact due to their large geographic ranges and ecological differentiation that enforces tight boundaries regardless of the biogeographic attributes of the contacts. Opposing the great variability of introgression patterns found between cryptic species, these results support that gene flow should not be viewed as a force of despeciation when reproductive isolation involves multiple intrinsic and extrinsic barriers.
“…Alexandri et al., 2012, 2016; Tryfonopoulos et al., 2010), amphibians (e.g. Dufresnes, Strachinis, Suriadna, et al., 2019, Dufresnes, Berroneau, 2020, Dufresnes, Probonas, 2020; Pabijan et al., 2017; Wielstra & Arntzen, 2014) and reptiles such as lizards (e.g. Gvoždík et al., 2010; Kornilios et al., 2020; Marzahn et al., 2016; Psonis et al., 2018; Sagonas et al., 2014) and snakes (e.g.…”
The area of the south‐western Balkans hosts a remarkably high species richness and has been considered a biodiversity hotspot. The significance of the Balkan Peninsula as a biodiversity refugium during the Quaternary climatic fluctuations has been repeatedly pointed out in literature, yet the area remains quite understudied in terms of phylogeography. Contributing to the biogeography and phylogeography of the Balkan area, we herein present the phylogeographic relationships within the lizards of the genus Algyroides, focusing on the two species that occur in the Balkans (namely, A. nigropunctatus and A. moreoticus), including representatives of Dinarolacerta and Lacerta lizards as outgroups. We combined phylogenetic, phylogeographic and species distribution modelling analyses, using both mitochondrial and nuclear DNA data, in order to uncover the phylogeographic history of the genus and evaluate the validity of the extant taxonomy. Our results reveal three major clades within Algyroides in southern Balkans; one corresponds to A. moreoticus, having sister group relationships with the genus Dinarolacerta, and the other two to A. nigropunctatus, each corresponding to one of the morphological subspecies, which seem to be monophyletic, allopatric and reproductively isolated. These results expose an unprecedented phylogeographic pattern in the area of western Greece where the two major clades of A. nigropunctatus meet, and can contribute to a taxonomic re‐evaluation of the species. Moreover, questions are raised on the validity of Dinarolacerta as a genus due to it clustering within the genus Algyroides.
“…For instance, the impact of the Quaternary glaciations on biota is a topic of considerable interest and modeling can help answer questions. Thus, environmental modeling allows reconstructing the dynamics of species distribution in the Holocene and Pleistocene (e.g., Garcia-Porta et al, 2012;Wielstra et al, 2013;Skorinov & Litvinchuk, 2016;Dufresnes et al, 2018;Dufresnes et al, 2019;Dufresnes et al, 2020a;Dufresnes et al, 2020b).…”
The use of ecological models enables determining the current distribution of species, but also their past distribution when matching climatic conditions are available. In specific cases, they can also be used to determine the likelihood of fossils to belong to the same species—under the hypothesis that all individuals of a species have the same ecological requirements. Here, using environmental modeling, we reconstructed the distribution of the Mongolian toad, Strauchbufo raddei, since the Last Glacial Maximum and thus covering the time period between the Late Pleistocene and the Holocene. We found the range of the species to have shifted over time, with the LGM population clustered around the current southern range of the species, before expanding east and north during the Pleistocene, and reaching the current range since the mid-Holocene. Finally, we determined that the ecological conditions during the life-time of the mid-Pleistocene fossils attributed to the species in Europe were too different from the one of the extant species or fossils occurring at the same period in Asia to belong to the same species.
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