Recent physiological studies indicate that weightlessness reliably alters ocular structure and function, as well as the ability to process visual-spatial information. The posterior parietal cortex (PPC) and lateral geniculate nucleus (LGN) are two key brain areas implicated in the processing of visual-spatial information. Here, we used the modified tail-suspension rat model to simulate the physiological effects of microgravity. Rats were divided into four groups, which exposed to the simulated microgravity environment for 0 (Control group), 7, 14, or 28 days. We found a significant increase in cellular apoptosis in the PPC and the LGN after 7 days of simulated microgravity. In addition, there was an increase in expression of c-Fos protein in the PPC, and a repression of the PI3K/Akt signaling pathway in the LGN after 7 days. Based on these results, we conclude that short-term simulated microgravity may induce cell apoptosis in the PPC and LGN, and reflect a neural adaptive process to accommodate a microgravity environment.