The impact of intramolecular polar bonds ͑IPBs͒ on the energy level alignment in layered systems of rodlike conjugated molecules standing on the substrate was investigated for pentacene ͑PEN͒ and perfluoropentacene ͑PFP͒ on SiO 2 using ultraviolet photoelectron spectroscopy. A remarkably large energy offset of 1.75 eV was found between the highest occupied molecular orbital ͑HOMO͒ levels of PEN and PFP caused by IPBs at the surface of standing PFP layers. This large HOMO-level offset results in a narrow intermolecular energy gap of approximately 0.4 eV at the interface between PEN and PFP layers. However, the absence of significant spatial overlap of PEN and PFP electron wave functions across the layers suppresses interlayer optical transitions. © 2009 American Institute of Physics. ͓DOI: 10.1063/1.3073046͔The energy level offsets in organic/organic interfaces are crucial parameters for the performance of optoelectronic devices based on organic compounds. 1,2 Intensive research efforts are being carried out to understand the energy level alignment in organic heterostructures with the aim of achieving full control over interface energetics. [3][4][5][6] Recently, the importance of intramolecular polar bonds ͑IPBs͒ on the electronic structure in organic/organic heterostructures was realized and it was demonstrated that IPBs can significantly impact the ionization energy ͑IE͒ of ordered molecular assemblies. 7,8 The IE is commonly believed to be a key parameter for energy level alignment. 9,10 Pentacene ͑PEN͒ and its perfluorinated analog perfluoropentacene ͑PFP͒ are promising materials for use in organic electronics due to their high charge-carrier mobilities for holes ͑PEN͒ ͑Ref. 11͒ and electrons ͑PFP͒. 12 Moreover, they are excellent model systems for investigating the impact of IPBs.Ordered films of organic molecules without a net intrinsic molecular dipole moment can still exhibit sizable surface dipoles through the collective electrostatic effect of IPBs ͓see sketch for PEN and PFP in Fig. 1͑a͔͒, thus leading to a molecular-orientation dependence of the IE. 7,8 For films formed by flat-lying PEN or PFP molecules ͑i.e., with the molecular planes oriented parallel to the substrate͒, the negatively charged -electron cloud above each ring is exposed on the surface ͓Fig. 1͑b͔͒. The resulting surface dipole layers are rather similar for flat-lying PEN and PFP and, therefore, the IEs of flat-lying PEN and PFP can be seen as their "intrinsic" IEs, which are not affected by IPBs. In contrast, in films of standing molecules the hydrogen atoms ͓carrying a slightly positive partial charge͔ ͑PEN͒ and the strongly electronegative fluorine atoms ͑PFP͒ are exposed at the surface. This results in surface dipoles of opposite sign that significantly impact the IE of the respective standing layers. Consequently, PEN and PFP exhibit a moderate difference in the IE ͑⌬IE͒ of 0.45 eV for films of lying molecules, 13 but a substantially increased ⌬IE of 1.85 eV for films of standing molecules. 8 Both molecules grow in an almost upri...