Primary keratinocytes immortalized by human papillomaviruses (HPVs), along with HPV-induced cervical carcinoma cell lines, are excellent models for investigating neoplastic progression to cancer. By simultaneously visualizing viral DNA and nascent viral transcripts in interphase nuclei, we demonstrated for the first time a selection for a single dominant papillomavirus transcription center or domain (PVTD) independent of integrated viral DNA copy numbers or loci. The PVTD did not associate with several known subnuclear addresses but was almost always perinucleolar. Silent copies of the viral genome were activated by growth in the DNA methylation inhibitor 5-azacytidine. HPV-immortalized keratinocytes supertransduced with HPV oncogenes and selected for marker gene coexpression underwent crisis, and the surviving cells transcribed only the newly introduced genes. Thus, transcriptional selection in response to environmental changes is a dynamic process to achieve optimal gene expression for cell survival. This phenomenon may be critical in clonal selection during carcinogenesis. Examination of HPV-associated cancers supports this hypothesis.Cellular responses to growth stimuli or stress quickly result in adaptive chromatin remodeling, leading to alterations in gene expression. Modulations made to optimize cell survival can result in the dysregulation of genes governing cell growth and differentiation and in genomic instability (28), such as those associated with neoplastic progression. In cancers in which cellular proto-oncogene amplification has occurred, higher than normal levels of proto-oncoprotein are observed. Whether this is a result of transcription from all amplified gene copies or from a single locus with increased promoter strength or, alternatively, of mRNA stabilization remains to be elucidated. A superb system for studying genetic and transcriptional alternations associated with neoplastic progression can be found in early and late passages of primary keratinocytes immortalized by high-risk human papillomavirus (HPV) genotypes, in HPV-induced cervical cancers, and in cell lines derived therefrom (73). In such cells, substantial changes have occurred in cellular and viral gene expression relative to that in productively infected, benign condylomata and papillomas. In the present study, we used in situ analytic methods to visualize HPV oncogene expression in individual cells of both experimental model and naturally arising neoplasms and observed striking and unexpected changes accompanying progression.The molecular basis for HPV oncogenesis is predicated on the mechanisms by which these normally benign viruses reproduce themselves. In productive infections, the 8-kb, doublestranded, circular viral DNAs amplify as extrachromosomal nuclear plasmids, and this amplification is restricted to postmitotic differentiated cells of the squamous epithelium. DNA synthesis requires the E2 origin recognition protein and the E1 viral helicase protein, as well as the reactivated host replication machinery. Thus, HPVs e...