SMARCAL1, a DNA remodeling protein fundamental to genome integrity during replication, is the only gene associated with the developmental disorder Schimke immuno-osseous dysplasia (SIOD). SMARCAL1-deficient cells show collapsed replication forks, S-phase cell cycle arrest, increased chromosomal breaks, hypersensitivity to genotoxic agents, and chromosomal instability. The SMARCAL1 catalytic domain (SMARCAL1 CD ) is composed of an SNF2-type doublestranded DNA motor ATPase fused to a HARP domain of unknown function. The mechanisms by which SMARCAL1 and other DNA translocases repair replication forks are poorly understood, in part because of a lack of structural information on the domains outside of the common ATPase motor. In the present work, we determined the crystal structure of the SMARCAL1 HARP domain and examined its conformation and assembly in solution by small angle X-ray scattering. We report that this domain is conserved with the DNA mismatch and damage recognition domains of MutS/MSH and NER helicase XPB, respectively, as well as with the putative DNA specificity motif of the T4 phage fork regression protein UvsW. Loss of UvsW fork regression activity by deletion of this domain was rescued by its replacement with HARP, establishing the importance of this domain in UvsW and demonstrating a functional complementarity between these structurally homologous domains. Mutation of predicted DNA-binding residues in HARP dramatically reduced fork binding and regression activities of SMARCAL1 CD . Thus, this work has uncovered a conserved substrate recognition domain in DNA repair enzymes that couples ATP-hydrolysis to remodeling of a variety of DNA structures, and provides insight into this domain's role in replication fork stability and genome integrity.replication restart | fork reversal A ccurate DNA replication is essential for genomic stability (1). Aberrant DNA structures, protein barriers, and chemically modified DNA thwart progression of the replication fork and lead to mutations, cytotoxicity, and increased chromosomal rearrangements (2-5). Uncoupling of polymerase and helicase activities at a stalled fork (6) results in an accumulation of singlestranded (ss) DNA (Fig. 1A), rendering the genome susceptible to nuclease cleavage and thereby increasing the probability of genetic rearrangements (7-9). Failure to stabilize stalled forks can lead to replisome dissociation and fork degradation or collapse. DNA damage response (DDR) pathways maintain genomic integrity by rectifying or protecting stalled or collapsed forks and regulating DNA repair (9-11). In humans, accumulation of the ssDNA-binding protein Replication Protein A (RPA) at stalled forks signals recruitment of the S-phase checkpoint kinase ATR (12-15), consequently triggering recruitment of proteins that promote sister chromatid cohesion and stabilize the histone/chromatin structure (16).Stabilization, repair, and restart of stalled forks can involve regression of the fork into a four-stranded "chicken foot" structure, in which the nascent DNA str...