Pseudomonas syringae
pv.
syringae
(
Pss
) is an emerging phytopathogen that causes
Pseudomonas
leaf spot (PLS) disease in pepper plants.
Pss
can cause serious economic damage to pepper production, yet very little is known about the virulence factors carried by
Pss
that cause disease in pepper seedlings. In this study,
Pss
strains isolated from pepper plants showing PLS symptoms in Ohio between 2013 and 2021 (
n
= 16) showed varying degrees of virulence (
Pss
populations and disease symptoms on leaves) on 6-week-old pepper seedlings.
In vitro
studies assessing growth in nutrient-limited conditions, biofilm production, and motility also showed varying degrees of virulence, but
in vitro
and
in planta
variation in virulence between
Pss
strains did not correlate. Comparative whole-genome sequencing studies identified notable virulence genes including 30 biofilm genes, 87 motility genes, and 106 secretion system genes. Additionally, a total of 27 antimicrobial resistance genes were found. A multivariate correlation analysis and Scoary analysis based on variation in gene content (
n
= 812 variable genes) and single nucleotide polymorphisms within virulence genes identified no significant correlations with disease severity, likely due to our limited sample size. In summary, our study explored the virulence and antimicrobial gene content of
Pss
in pepper seedlings as a first step toward understanding the virulence and pathogenicity of
Pss
in pepper seedlings. Further studies with additional pepper
Pss
strains will facilitate defining genes in
Pss
that correlate with its virulence in pepper seedlings, which can facilitate the development of effective measures to control
Pss
in pepper and other related
P. syringae
pathovars.
IMPORTANCE
Pseudomonas
leaf spot (PLS) caused by
Pseudomonas syringae
pv.
syringae
(
Pss
) causes significant losses to the pepper industry. Highly virulent
Pss
strains under optimal environmental conditions (cool–moderate temperatures, high moisture) can cause severe necrotic lesions on pepper leaves that consequently can decrease pepper yield if the disease persists. Hence, it is important to understand the virulence mechanisms of
Pss
to be able to effectively control PLS in peppers. In our study,
in vitro
,
in planta
, and whole-genome sequence analyses were conducted to better understand the virulence and pathogenicity characteristics of
Pss
strains in peppers. Our findings fill a knowledge gap regarding potential virulence and pathogenicity characteristics of
Pss
in peppers, including virulence and antimicrobial gene content. Our study helps pave a path to further identify the role of specific virulence genes in causing disease in peppers, which can have implications in developing strategies to effectively control PLS in peppers.