Abstract. Sediments may act as a sink for nutrients and trace metals after deposition. It may pose a risk for surface water quality and ecosystem health when environmental changes lead to release nutrients and trace metals stored in these sedimentary stocks. The management of the quality of freshwater systems needs to understand the processes of remobilisation of these stocks. This mobility is dependent on the erosion, on the interstitial diffusion of the mobile phases and on the bioturbation. These mechanisms depend on early diagenetic processes that condition the physical and biogeochemical properties of the sedimentary column. These properties are mainly influenced by the redox transformations resulting from oxidation of the organic matter by the microbial activity. These reactions generate vertical profiles of nutrient and metals concentrations along the sedimentary column. This paper aims to propose a modelling and an experimental protocol to determine vertical profiles of nutrients and trace metals in saturated sedimentary columns of freshwater systems. The modelling approach is based on a coupling between bio-geochemical processes [1], interstitial diffusion [2, 3] and solid-liquid exchanges. The main originality of the model is the pH determination that is directly calculated from the pore water concentrations of the ionic species. As illustration, this paper presents an application to natural sediment cores collected in the Durance Rivers.In freshwater systems, trace metal pollutants are transferred into water and sedimentary columns under dissolved forms and fixed onto solid particles. Accumulated in the sedimentary areas, these latter ones can constitute important stocks of materials and associated pollutants. The mobility of the stocks of pollutants is mainly depending on the erosion, on the interstitial diffusion of the mobile phases (dissolved and colloidal) and on the bioturbation. In this context, this communication presents an analysis of the mobility by interstitial diffusion by comparing experimental results and modelling. This topic involves two main points: 1) Trace metal fractionation between their mobile (dissolved and colloidal) and non mobile (fixed onto the particles) forms; 2) Interstitial diffusion of the mobile phases. The first point is governed by sorption/desorption processes at the particle surfaces. In the sedimentary column, these processes are regulated by physico-chemical parameters as pH, potential redox, concentrations and nature of particles. In sediments, these parameters are mainly influenced by biochemical reactions resulting from the oxidation of the organic matter by the microbial activity: oxic respiration, denitrification, manganese hydroxide and iron hydroxide reduction, sulphate reduction, methanogenesis [4]. In this context, this work proposes a model coupling these biogeochemical reactions to sorption/desorption processes of trace metals and interstitial diffusion. In order to refine and to evaluate this model, an experimental protocol has also been developed to...