Abstract:In the field of computational biology, sequence alignment is a very important methodology. BLAST is a very common tool for performing sequence alignment in bioinformatics provided by National Center for Biotechnology Information (NCBI) in the USA. The BLAST server receives tens of thousands of queries every day on average. Among the procedures of BLAST, the hit detection process whose core architecture is a lookup table is the most time-consuming. In the latest work, a lightweight BLASTP on CUDA GPU with a hyb… Show more
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