The complete mitochondrial genomes of two octopods of the eastern Pacific Ocean: Octopus mimus and ‘Octopus’ fitchi (Cephalopoda: Octopodidae) and their phylogenetic position within Octopoda

Magallón-Gayón, Erika; Río-Portilla, Miguel A. Del; Barriga-Sosa, Irene de los A.

doi:10.1007/s11033-019-05186-8

Cited by 7 publications

(3 citation statements)

References 42 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Nowadays, next-generation sequencing (NGS) has allowed the development of novel genetic analyses with no previous knowledge of the DNA sequences for a particular species, and its impact has been recognized for more than a decade (Schuster 2008, Metzker 2010, Chinmayee et al 2018). Mitochondrial genomes have been obtained by NGS using Illumina platforms for marine (Del Río-Portilla et al 2016c, Galván-Tirado et al 2016, León-Pech et al 2016) and freshwater fishes (Barriga-Sosa et al 2016;Camarena-Rosales et al 2016;Del Río-Portilla et al 2016a, b), elasmobranchs (Castillo-Páez et al 2016a, b), corals (Del Río-Portilla et al 2016d), and mollusks (Bisbal-Pardo et al 2016aMagallón-Gayón et al 2020).…”

Section: Introductionmentioning

confidence: 99%

Genoma mitocondrial completo del lenguado de California, Paralichthys californicus

et al. 2020

View full text Add to dashboard Cite

El lenguado de California, Paralichthys californicus, es una especie de pez plano con un alto valor econónico debido a su tamaño y a la calidad de su carne. En este trabajo se presenta el genoma mitocondrial completo de P. californicus. Se extrajo ADN total de tejido muscular y se secuenció utilizando la plataforma Illumina. Las lecturas obtenidas se limpiaron, se recortaron, se ensamblaron de novo y se anotaron. El mitogenoma del lenguado de California tiene una logitud de 16,858 pb (número de acceso del GenBank: MT859134) y contiene 13 genes codificadores de proteínas, 22 ARNt, 2 ARNr y la región control. El mitogenoma de P. californicus fue más similar al de Paralichthys olivaceus que a mitogenomas de otros peces planos, en concordancia con su distribución geográfica. La información aquí presentada incrementa el conocimiento del lenguado de California, el cual no solo es una especie de importancia económica, sino también un recurso socioeconómico relevante para la pesquería y la acuicultura de California, EUA, y de Baja California, México.

show abstract

Section: Introductionmentioning

confidence: 99%

Genoma mitocondrial completo del lenguado de California, Paralichthys californicus

et al. 2020

View full text Add to dashboard Cite

show abstract

“… 2013 ; Magallón-Gayón et al. 2020 ). Detailed genomic structure is as follows: (1) There are 13 protein-coding, two rRNA, and 22 tRNA genes; (2) One control region is located between the COX3 and tRNA-Glu (817 bp-long); (3) Seven of the 13 protein-coding genes are coded on the L chain (ATP6, ATP8, COII, COI, ND2, ND3, and COIII); (4) ND4L is located in tandem with ND4 on the H chain; (5) Both the SSU-rRNA and LSU-rRNA coding genes are located on the H chain; (6) eight tRNA genes (tRNA-Ser(agc), tRNA-Thr, tRNA-Ile, tRNA-Asn, tRNA-Arg, tRNA-Ala, tRNA-Lys, and tRNA-Asp) are located on the L chain.…”

mentioning

confidence: 99%

“… 2013 ; Magallón-Gayón et al. 2020 ). To check the phylogenetic position of A. argo among the octopods, we collected mitogenome sequences of one polyplacophoran and one gastropod as outgroups, three nautiloids, five decapodiforms, and 17 octopodiforms from GenBank, and included them in the data set for phylogenetic analyses.…”

mentioning

confidence: 99%

The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes

Hirota

Yoshida

Itoh

et al. 2021

Mitochondrial DNA Part B

View full text Add to dashboard Cite

The greater argonaut Argonauta argo is a species of the paper nautilus (Argonautidae), which is a family in Octopoda. In this paper, we report its full mitogenome sequence, which was obtained from a specimen collected in the Japan Seas near Oki Island, Shimane Prefecture, in Japan. The sequence was determined using the NGS Illumina HiSeq platform. With its 37 genes, the mitogenome shows a typical metazoan and Octopoda genomic structure, and similar to the mitogenome of the previously reported congener, A. hians . To confirm A. argo phylogenetic position in Octopoda, we conducted maximum likelihood phylogenetic analysis, using a data set including publicly available 17 Octopodiformes, five Decapodiformes, three Nautiloids and two outgroup Conchiferans. The result confirmed the affinity of Argonautidae to Tremoctopus , and the sister group position of this clade against the rest of incirrate Octopods. The mitogenome and phylogeny of A. argo reported here will be useful for future studies involving this enigmatic species, including on the reacquisition of external calcified shell structures in mollusks.

show abstract

Gene rearrangements in the mitochondrial genome of Eucleoteuthis luminosa (Ommastrephidae, Cephalopoda) and phylogenetic implications for Coleoidea

et al. 2023

View full text Add to dashboard Cite

The complete mitochondrial genomes of two octopods of the eastern Pacific Ocean: Octopus mimus and ‘Octopus’ fitchi (Cephalopoda: Octopodidae) and their phylogenetic position within Octopoda

Cited by 7 publications

References 42 publications

Genoma mitocondrial completo del lenguado de California, Paralichthys californicus

Genoma mitocondrial completo del lenguado de California, Paralichthys californicus

The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes

Gene rearrangements in the mitochondrial genome of Eucleoteuthis luminosa (Ommastrephidae, Cephalopoda) and phylogenetic implications for Coleoidea

Contact Info

Product

Resources

About