The complete mitochondrial genome of Jinbian carp Cyprinus carpio (Cypriniformes: Cyprinidae)

Abstract

Jinbian carp ( Cyprinus carpio ) is an endemic species in China. The complete mitochondrial genome of Jinbian carp is determined to be 16,581 bp in length and includes 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a control region. Its structural organization and gene order are equivalent to other common carp strains. The phylogenetic analyses will contribute to further insights of the taxonomy and phylogeny in Cyprinidae family.

ITRAQ Proteomic Analysis of Yellow and Black Skin in Jinbian Carp (Cyprinus carpio)

“…In addition to the GO analysis, KEGG pathway enrichment analysis was also used to further elucidate the putative functions of these DEPs. These results demonstrated that down-regulated proteins in yellow skin were mainly involved in the oxidative phosphorylation (53/142), carbon metabolism (33/142), cardiac muscle contraction (22/142), biosynthesis of amino acids (14), fatty acid metabolism (13), calcium signaling pathway (13), fatty acid degradation (13), citrate cycle (13), necroptois (12), propanoate metabolism (12), valine, leucine and isoleucine degradation (12), glycolysis/gluconeogenesis (11), adrenergic signaling in cardiomyocytes (11), cysteine and methionine metabolism (10), purine metabolism (two), biosynthesis of unsaturated fatty acids (8), beta-Alanine metabolism (eight), butanoate metabolism (eight), tryptophan metabolism (eight), cellular senescence (eight), lysine degradation (eight), starch and sucrose metabolism (eight), and fatty acid elongation (eight) (Figure 6A). In addition, the up-regulated proteins in yellow skin were enriched in the phagosome (5/21), lysosome (five), focal adhesion (three), salmonella infection (three), adrenergic signaling in cardiomyocytes (three), cardiac muscle contraction (three), apoptosis (three), mitophagy (two), and MAPK signaling pathway (one) (Figure 6A).…”

“…In China, several variants have also been developed in the regional distribution and cultivation zones over thousands of years. Among them, Jinbian carp is an important variant for paddy-field fish culture in China, which appears with two yellow stripes on both sides of its dorsal fin [ 11 ]. Due to its variable colors, Jinbian carp is a good system for studying color pattern polymorphism.…”

Complete mitochondrial genome sequence of Catla catla (Hamilton, 1822) from the Halda river of Bangladesh

“…The control region is between trnaP and tnaF and has a size of 930 bp. The structural organization and gene order of mtDNA sequence of Catla catla correspond to other common carp strains (Chang et al 1994;Wang et al 2013;Liu et al 2016, Ye et al 2018). The phylogenetic relationship was estimated using neighbour-joining method implemented in CLC main workbench (Fig.…”

“… 2016 , Ye et al. 2018 ). The phylogenetic relationship was estimated using neighbour-joining method implemented in CLC main workbench ( Fig.…”

Characterization of the complete mitochondrial genome of Onychostoma macrolepis (Teleostei: Cyprinidae)

“… 2018 ; Ye et al. 2018 ). Except the ND6 and 8tRNA genes ( tRNA-Ala, tRNA-Asn, tRNA-Tyr, tRNA-Gln, tRNAPro, tRNA-Glu, tRNA-Cys, and tRNA-Ser ), all other genes were encoded on the H-strand.…”