The complete mitochondrial genome of<i>Macrotermes barneyi</i>Light (Isoptera: Termitidae)

Wei, Shu‐Jun; Ni, Jinfeng; Yu, Meng‐Fei; Bao-cai, Shi

doi:10.3109/19401736.2012.710215

Cited by 16 publications

(7 citation statements)

References 14 publications

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“…In order to discuss the phylogenetic relationships of Toxoderidae, 43 previously sequenced mantis mitogenomes ( Cameron, Barker & Whiting, 2006 ; Wang et al, 2016 ; Ye et al, 2016 ; Tian et al, 2017 ; Zhang & Ye, 2017 ; Zhang et al, 2018a ; Zhang et al, 2018b ) were used in the phylogenetic analyses. The outgroup taxa were two cockroaches, Cryptocercus kyebangensis and Eupolyphaga sinensis ( Zhang et al, 2010 ) and two termites, Termes hospes ( Dietrich & Brune, 2016 ) and Macrotermes barneyi ( Wei et al, 2012 ). Accession numbers of all mitogenomes are listed in the phylogenetic trees.…”

Section: Methodsmentioning

confidence: 99%

Gene characteristics of the complete mitochondrial genomes of Paratoxodera polyacantha and Toxodera hauseri (Mantodea: Toxoderidae)

Zhang

Cai

et al. 2018

PeerJ

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The family Toxoderidae (Mantodea) contains an ecologically diverse group of praying mantis species that have in common greatly elongated bodies. In this study, we sequenced and compared the complete mitochondrial genomes of two Toxoderidae species, Paratoxodera polyacantha and Toxodera hauseri, and compared their mitochondrial genome characteristics with another member of the Toxoderidae, Stenotoxodera porioni (KY689118). The lengths of the mitogenomes of T. hauseri and P. polyacantha were 15,616 bp and 15,999 bp, respectively, which is similar to that of S. porioni (15,846 bp). The size of each gene as well as the A+T-rich region and the A+T content of the whole genome were also very similar among the three species as were the protein-coding genes, the A+T content and the codon usages. The mitogenome of T. hauseri had the typical 22 tRNAs, whereas that of P. polyacantha had 26 tRNAs including an extra two copies of trnA-trnR. Intergenic regions of 67 bp and 76 bp were found in T. hauseri and P. polyacantha, respectively, between COX2 and trnK; these can be explained as residues of a tandem duplication/random loss of trnK and trnD. This non-coding region may be synapomorphic for Toxoderidae. In BI and ML analyses, the monophyly of Toxoderidae was supported and P. polyacantha was the sister clade to T. hauseri and S. porioni.

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Section: Methodsmentioning

confidence: 99%

Gene characteristics of the complete mitochondrial genomes of Paratoxodera polyacantha and Toxodera hauseri (Mantodea: Toxoderidae)

Zhang

Cai

et al. 2018

PeerJ

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“…8 and primer sequences are given in the main text [1] . Five data sets (PCG123, PCG123R, PCG12, PCG12R and PCGAA) of 46 samples including 15 previously sequenced mantis mitogenomes [9] , [10] , [11] , [12] , [13] were used along with the mitogenomes of two cockroaches [14] and two termites [15] , [16] as outgroups. ML and BI analyses were implemented in RAxML 8.2.0 [17] and MrBayes 3.2 [18] , respectively.…”

Section: Experimental Design Materials and Methodsmentioning

confidence: 99%

Data for praying mantis mitochondrial genomes and phylogenetic constructions within Mantodea

Zhang

Storey

et al. 2018

Data in Brief

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In this data article, we provide five datasets of mantis mitochondrial genomes: (1) PCG123: nucleotide sequences of 13 protein-coding genes including all codon positions; (2) PCG123R: nucleotide sequences of two rRNAs and 13 protein-coding genes including all codon positions; (3) PCG12: nucleotide sequences of 13 protein-coding genes without third codon positions; (4) PCG12R: nucleotide sequences of two rRNAs and 13 protein-coding genes without third codon positions, and (5) PCGAA: amino acid sequences of 13 protein-coding genes. These were used to construct phylogenetic relationships within Mantodea and the phylogenetic trees inferred from Bayesian analysis using two data sets (PCG12R, PCGAA) and Maximum Likelihood analysis using four data sets (PCG123, PCG12, PCG12R and PCGAA). We also provide initiation codon, termination codon, amino acid length and nucleotide diversity (Pi) of protein-coding genes among 27 mantises. The whole mitochondrial genomes of 27 praying mantises were submitted to GenBank with the accession numbers KY689112–KY689138.

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“…To elucidate the phylogenetic relationships among basal Hexapoda, 35 sequences of the complete mitochondrial genomes were obtained from GenBank database ( Table 1 ). Among the mitochondrial genomes we selected, there were 5 from the earlier published bristletails [ 2 , 24 , 27 – 29 ], 3 from another primitive wingless order Zygentoma [ 30 – 32 ], 8 from the Paleoptera order: Ephemeroptera and Odonata [ 33 – 36 ], 4 from the Polyneoptera order: Blattaria [ 37 ], Isoptera [ 38 ], Mantodea [ 39 ] and Orthoptera [ 40 ]. To optimize the outgroup selection, we selected 14 entognathan species and 2 Crustacean species as outgroups to construct phylogenetic trees, respectively [ 28 , 30 , 41 – 46 ].…”

Section: Methodsmentioning

confidence: 99%

The Complete Mitochondrial Genomes of Three Bristletails (Insecta: Archaeognatha): The Paraphyly of Machilidae and Insights into Archaeognathan Phylogeny

et al. 2015

PLoS ONE

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The order Archaeognatha was an ancient group of Hexapoda and was considered as the most primitive of living insects. Two extant families (Meinertellidae and Machilidae) consisted of approximately 500 species. This study determined 3 complete mitochondrial genomes and 2 nearly complete mitochondrial genome sequences of the bristletail. The size of the 5 mitochondrial genome sequences of bristletail were relatively modest, containing 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes and one control region. The gene orders were identical to that of Drosophila yakuba and most bristletail species suggesting a conserved genome evolution within the Archaeognatha. In order to estimate archaeognathan evolutionary relationships, phylogenetic analyses were conducted using concatenated nucleotide sequences of 13 protein-coding genes, with four different computational algorithms (NJ, MP, ML and BI). Based on the results, the monophyly of the family Machilidae was challenged by both datasets (W12 and G12 datasets). The relationships among archaeognathan subfamilies seemed to be tangled and the subfamily Machilinae was also believed to be a paraphyletic group in our study.

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The complete mitochondrial genome ofMacrotermes barneyiLight (Isoptera: Termitidae)

Cited by 16 publications

References 14 publications

Gene characteristics of the complete mitochondrial genomes of Paratoxodera polyacantha and Toxodera hauseri (Mantodea: Toxoderidae)

Gene characteristics of the complete mitochondrial genomes of Paratoxodera polyacantha and Toxodera hauseri (Mantodea: Toxoderidae)

Data for praying mantis mitochondrial genomes and phylogenetic constructions within Mantodea

The Complete Mitochondrial Genomes of Three Bristletails (Insecta: Archaeognatha): The Paraphyly of Machilidae and Insights into Archaeognathan Phylogeny

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