The complete mitochondrial genome of the summer fruit tortrix moth<i>Adoxophyes orana</i>(Lepidoptera: Tortricidae)

Wu, Qirui; Liu, Wei; Bao-cai, Shi; Gu, Yun; Wei, Shugang

doi:10.3109/19401736.2012.748044

Cited by 15 publications

(5 citation statements)

References 11 publications

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“…We assembled a molecular dataset for each specimen comprising 1528 bp from the mitochondrial cytochrome oxidase subunit I gene (COI), and 922 bp from the D2 and D3 regions of the 28S rDNA gene (28S). This taxon sampling was augmented with 176 specimens from previous studies (Sperling & Hickey, ; Lee et al ., ; Hulcr et al ., ; Roe & Sperling, ; Lumley & Sperling, , ; Miller et al ., ; Son & Kim, ; Zhao et al ., , 2016; Zhu et al ., ; Dombroskie & Sperling, ; Shi et al ., ; Wu et al ., , ; Timmermans et al ., ; Niu et al ., ; Fagua et al . , b; see Appendix File S2 for GenBank accession numbers and specimens).…”

Section: Methodsmentioning

confidence: 99%

Genus delimitation, biogeography and diversification ofChoristoneuraLederer (Lepidoptera: Tortricidae) based on molecular evidence

Fagua

Condamine

Dombroskie

et al. 2018

Systematic Entomology

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Widely known for pest species that include major modulators of temperate forests, the genus Choristoneura is part of the species-rich tribe Archipini of leafroller moths (Tortricidae). Delimitation of the genus has remained unresolved because no phylogeny has included species endemic to Africa and studies have often omitted the type species of the genus. Further taxonomic confusion has been generated by the transfer of Archips occidentalis (Walsingham) to Choristoneura, creating a homonym with Choristoneura occidentalis Freeman, an important defoliator of North American forests. To define the limits of the genus, we reconstructed a phylogeny using DNA sequences for mitochondrial cytochrome oxidase subunit I and nuclear ribosomal 28S genes. Our ingroup included 23 Choristoneura species-level taxa, complemented by a large sample of outgroups comprising 82 species of Archipini and other Tortricidae. We generated a time-calibrated tree using fossil and secondary calibrations and we inferred biogeographic and diversification processes in Choristoneura. Our analysis recovered the genus as polyphyletic, with Archips occidentalis, Choristoneura simonyi and Choristoneura evanidana excluded from the main clade. Based on the recovered phylogenies and a redefinition, we restrict Choristoneura primarily to species with a northern hemisphere distribution. Our analysis supports A. occidentalis as the sister group of Cacoecimorpha pronubana, C. simonyi as the sister of 'Xenotemna' pallorana, and C. evanidana as the sister of Archips purpurana. A new combination is proposed: Archips evanidana comb.n.; the availability of 'Xenotemna' as a valid name is discussed and A. occidentalis is considered as an orphaned name within the Archipini. We found support for a Holarctic origin of Choristoneura about 23 Ma, followed by early divergence in the Palearctic region. The main divergence occurred at 16 Ma, with one clade in the Nearctic and another in the Palearctic. Subsequent cladogenetic events were synchronous and related to herbivorous specialization, with each clade divided into coniferophagous and polyphagous lineages. Their specialization as conifer feeders temporally matched the expansion of boreal forest during the Miocene. or Zelotherses. Our phylogenetic analysis indicates the closest relationship to Cacoecimorpha; however, we need a larger sample of African and Far East Archipini to corroborate the hypothesis.

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Section: Methodsmentioning

confidence: 99%

Genus delimitation, biogeography and diversification ofChoristoneuraLederer (Lepidoptera: Tortricidae) based on molecular evidence

Fagua

Condamine

Dombroskie

et al. 2018

Systematic Entomology

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“…(2006) Grapholita dimorpha NC_024582 15,813 Niu et al. (2016) Adoxophyes orana NC_021396 15,343 Wu et al. (2013) Cydia pomonella NC_020003 15,253 Shi et al.…”

Section: Methodsmentioning

confidence: 99%

The Complete Mitochondrial Genome ofBrachmia macroscopa(Lepidoptera: Gelechiidae) and Its Related Phylogenetic Analysis

Dong

Jiang

et al. 2016

J Insect Sci

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The sweet potato leaf folder, Brachmia macroscopa, is an important pest in China. The complete mitogenome, which consists of 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes, and an A + T-rich region, was sequenced and found to be 15,394 bp in length (GeneBank no. KT354968). The gene order and orientation of the B. macroscopa mitogenome were similar to those of other sequenced lepidopteran species. All of the PCGs started with ATN as the canonical start codon except for cox1, which started with CGA. In regard to stop codons, most PCGs stopped at TAA except for cox2, which stopped at TA, and nad4, which stopped at a single T. Thirteen PCGs of the available species (33 taxa) were used to demonstrate phylogenetic relationships. The ditrysian cluster was supported as a monophyletic clade at high levels by using maximum likelihood and Bayesian methods. The apoditrysian group, covering the Gelechioidea, formed a monophyletic clade with a bootstrap value of 88% and a posterior probability of 1.00. The superfamily Gelechioidea was supported as a monophyletic lineage by a posterior probability of 1.00.

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“…Occurrence density of A. orana on tea tree is the highest during the middle of June. Therefore, it has been reported to cause more damage during summer (Lee et al 1988;Yang et al 2009;Byun et al 2012;Wu et al 2013). The pest larva preferably target young tea leaves.…”

Section: Introductionmentioning

confidence: 99%

Effect of Ecofriendly Pesticides Against Adoxophyes orana (Lepidoptera: Tortrididae) on Tea Tree (Camellia sinensis L.)

Kyu¹,

Kang²

2014

Journal of Forest and Environmental Science

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The complete mitochondrial genome of the summer fruit tortrix mothAdoxophyes orana(Lepidoptera: Tortricidae)

Cited by 15 publications

References 11 publications

Genus delimitation, biogeography and diversification ofChoristoneuraLederer (Lepidoptera: Tortricidae) based on molecular evidence

Genus delimitation, biogeography and diversification ofChoristoneuraLederer (Lepidoptera: Tortricidae) based on molecular evidence

The Complete Mitochondrial Genome ofBrachmia macroscopa(Lepidoptera: Gelechiidae) and Its Related Phylogenetic Analysis

Effect of Ecofriendly Pesticides Against Adoxophyes orana (Lepidoptera: Tortrididae) on Tea Tree (Camellia sinensis L.)

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