The complete mitochondrial genome of <i>Alphitobius diaperinus</i> Panzer, 1797 (Coleoptera: Tenebrionidae)

Hong, Ki–Jeong; Ki, Woong; Park, Doo-Sang; Yang, Bong Min; Lee, Hyobin; Park, Jongsun; Lee, Wonhoon

doi:10.1080/23802359.2020.1772684

Cited by 8 publications

(8 citation statements)

References 15 publications

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“…It displays that two mitogenomes of A. diaperinus were clustered and three neighbor tribes were also clustered in one clade as same as the previous study (Hong et al. 2020 ; Figure 1 ).…”

supporting

confidence: 85%

“…Raw sequences generated from Illumina HiSeqX (Macrogen, Korea) were filtered by Trimmomatic 0.33 (Bolger et al 2014) and de novo assembled by Velvet 1.2.10 (Zerbino and Birney 2008), SOAPGapCloser 1.12 (Zhao et al 2011), BWA 0.7.17 (Li 2013), and SAMtools 1.9 (Li et al 2009) under the environment of Genome Information System (GeIS; http://geis.infoboss.co.kr/). Geneious R11 11.1.5 (Biomatters Ltd, Auckland, New Zealand) was used to annotate based on the previous mitogenome of A. diaperinus (MT165524; Hong et al 2020).…”

Section: Mitochondrial Genome;mentioning

confidence: 99%

“…We inferred phylogenetic relationship of 25 Tenebrionidae mitogenomes, including two A. diaperinus mitogenome based on alignment of complete mito genomes by MAFFT 7.450 (Katoh and Standley 2013) after rearranging mitogenome sequences as same as the previous study (Hong et al 2020). Bootstrapped neighbor joining, maximum likelihood, and Bayesian inference phylogenetic trees were constructed by MEGA X (Kumar et al 2018) and Mr. Bayes (Huelsenbeck and Ronquist 2001).…”

Section: Mitochondrial Genome;mentioning

confidence: 99%

“…Geneious R11 11.1.5 (Biomatters Ltd, Auckland, New Zealand) was used to annotate based on the previous mitogenome of A. diaperinus (MT165524; Hong et al. 2020 ).…”

mentioning

confidence: 99%

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The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome

Hong

Lee

et al. 2020

Mitochondrial DNA Part B

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We have determined the second mitochondrial genome of Alphitobius diaperinus Panzer, 1797 collected in Gyeonggi-do, Republic of Korea. The circular mitogenome of A. diaperinus is 15,512 bp long which is slightly longer than that of the previous mitogenome of A. diaperinus. It includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs. The base composition was AT-biased (72.4%). Intraspecific variation between two mitogenome of A. diaperinus was investigated: one SNP and one INDEL were identified, presenting the low level of intraspecific variations on mitochondrial genome.

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“…It displays that two mitogenomes of A. diaperinus were clustered and three neighbor tribes were also clustered in one clade as same as the previous study (Hong et al. 2020 ; Figure 1 ).…”

supporting

confidence: 85%

Section: Mitochondrial Genome;mentioning

confidence: 99%

Section: Mitochondrial Genome;mentioning

confidence: 99%

“…Geneious R11 11.1.5 (Biomatters Ltd, Auckland, New Zealand) was used to annotate based on the previous mitogenome of A. diaperinus (MT165524; Hong et al. 2020 ).…”

mentioning

confidence: 99%

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The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome

Hong

Lee

et al. 2020

Mitochondrial DNA Part B

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“…Two COI sequences published by ( 72 , 73 ) (accession no. KM435102.1 and KM652640.1) attributed to A. diaperinus show 99% identity with A. laevigatus [KP410252.1, ( 74 )] but only 88% with A. diaperinus [NC_049092.1, ( 75 )].…”

Section: Discussionmentioning

confidence: 99%

Detection of Alphitobius diaperinus by Real-Time Polymerase Chain Reaction With a Single-Copy Gene Target

et al. 2022

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Use of edible insects as an alternative source of proteins in food and feed is increasing. These last years, numerous companies in Europe have started producing insects for food and feed purposes. In the European Union, the use of edible insects for human consumption falls within Regulation (EU) No. 2015/2283 on novel foods. For feed, Commission Regulation (EU) 2017/893 authorizes seven insect species as processed animal proteins for aquaculture. Methods of authentication are required to check the conformity of the products. In this study, we propose a real-time polymerase chain reaction (PCR) method for the specific detection of the lesser mealworm (Alphitobius diaperinus), one of the species included in the shortlist of authorized insects. The selected target is the cadherin gene with a single-copy (per haploid genome) illustrated by our experimental evidence. The PCR test amplified a 134-bp fragment of the cadherin gene. The qualitative method was assessed toward several performance criteria. Specificity was checked against 54 insect species next to other animal and plant species. The sensitivity, efficiency, robustness, and transferability of the PCR assay were also successfully tested. Finally, the applicability of the test was assessed on real-life processed samples (industrial meals) of A. diaperinus. The study also showed that there seems to be a huge confusion on the correct labeling of the marketed mealworms. We did not succeed to get Alphitobius laevigatus samples. They all appeared to belong to the A. diaperinus taxon.

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Comparative mitogenome research revealed the phylogenetics and evolution of the superfamily Tenebrionoidea (Coleoptera: Polyphage)

Hu,

Jia,

et al. 2024

Ecology and Evolution

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Despite the worldwide distribution and rich diversity of the superfamily Tenebrionoidea, the knowledge of the mitochondrial genomes (mtgenome) characteristics of the superfamily is still very limited, and its phylogenetics and evolution remain unresolved. In the present study, we newly sequenced mtgenomes from 19 species belonging to Tenebrionoidea, and a total of 90 mitochondrial genomes from 16 families of Tenebrionoidea were used for phylogenetic analysis. There exist 37 genes for all 82 species of complete mtgenomes of 16 families investigated, and their characteristics are identical as reported mtgenomes of other Tenebrionoids. The Ka/Ks analysis suggests that all 13 PCGs have undergone a strong purifying selection. The phylogenetic analysis suggests the monophyly of Mordellidae, Meloidae, Oedemeridae, Pyrochroidae, Salpingidae, Scraptiidae, Lagriidae, and Tenebrionidae, and the Mordellidae is close to the Ripiphoridae. The “Tenebrionidae clade” and “Meloidae clade” are monophyletic, and both of them are sister groups. In the “Meloidae clade,” Meloidae is close to Anthicidae. In the “Tenebrionidae clade,” the family Lagriidae and Tenebrionidae are sister groups. The divergence time analysis suggests that Tenebrionoidea originated in the late Jurassic, Meloidae Mordellidae, Lagriidae, and Tenebrionidae in the Cretaceous, Oedemeridae in Paleogene. The work lays a base for the study of mtgenome, phylogenetics, and evolution of the superfamily Tenebrionoidea.

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The complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae)

Cited by 8 publications

References 15 publications

The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome

The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome

Detection of Alphitobius diaperinus by Real-Time Polymerase Chain Reaction With a Single-Copy Gene Target

Comparative mitogenome research revealed the phylogenetics and evolution of the superfamily Tenebrionoidea (Coleoptera: Polyphage)

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