The complete mitochondrial genome of the Chinese Sika deer (<i>Cervus nippon</i>Temminck, 1838), and phylogenetic analysis among Cervidae, Moschidae and Bovidae

Yang, Chengzhong; Li, Peng; Zhang, Xiuyue; Yanshu, Guo; Gao, Yimin; Xiong, Yuanqing; Wang, Linbo; Qi, Wenbao; Yue, Bisong

doi:10.1080/00222933.2012.693959

Cited by 15 publications

(21 citation statements)

References 34 publications

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“…The size and orientation of tRNA and rRNA genes are similar to those of other cervids [8, 12-13, 21, 25-27, 33, 35]. The lack of the ''DHU'' arm in tRNA Ser has been reported in other species of Cervidae [8,21,[25][26][27]35]. The non-coding control region contains conserved sequence blocks, and termination-associated sequences; and can be used for fine-scale population studies, since it is amongst the most rapidly evolving segments in the animal mtDNA [17,19,24,28].…”

Section: Discussionsupporting

confidence: 49%

“…The relationships among sika deer inferred from our phylogenetic and evolutionary analyses were inconsistent with subspecies designation, but similar to previous mitochondrial phylogenies [12,15,35]. The divergence times (less than 0.01 mya) suggest that Cervus elaphus songaricus, Cervus elaphus alxaicus, Cervus elaphus xanthopygus are more closely related to Cervus nippon than to other Cervus elaphus subspecies.…”

Section: Acta Biologica Hungarica 67 2016supporting

confidence: 53%

“…All supra-generic taxa described in previous studies [7,[34][35]37] are highly supported, i.e. the subfamily Cervinae with two tribes Cervini and Muntiacini, and the subfamily Capreolinae with three tribes Alceini, Odocoileini and Capreolini.…”

Section: Mitogenomic Phylogeny Of the Family Cervidaementioning

confidence: 75%

“…The divergence times (less than 0.01 mya) suggest that Cervus elaphus songaricus, Cervus elaphus alxaicus, Cervus elaphus xanthopygus are more closely related to Cervus nippon than to other Cervus elaphus subspecies. The close relationship of these two groups, as described previously, could be the result of the evolution of the genus Cervus in Asia [5,7,9,15,22,35,36], or maybe it could be attributed to anthropogenic influences as seen in European deer [18, 20, 28-29, 33, 36].…”

Section: Acta Biologica Hungarica 67 2016mentioning

confidence: 88%

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Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Frank¹,

Barta²,

Bana³

et al. 2016

Acta Biologica Hungarica

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Recently, there has been considerable interest in genetic differentiation in the Cervidae family. A common tool used to determine genetic variation in different species, breeds and populations is mitochondrial DNA analysis, which can be used to estimate phylogenetic relationships among animal taxa and for molecular phylogenetic evolution analysis. With the development of sequencing technology, more and more mitochondrial sequences have been made available in public databases, including whole mitochondrial DNA sequences. These data have been used for phylogenetic analysis of animal species, and for studies of evolutionary processes.We determined the complete mitochondrial genome of a Central European red deer, Cervus elaphus hippelaphus, from Hungary by a next generation sequencing technology. The mitochondrial genome is 16 354 bp in length and contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region, all of which are arranged similar as in other vertebrates. We made phylogenetic analyses with the new sequence and 76 available mitochondrial sequences of Cervidae, using Bos taurus mitochondrial sequence as outgroup. We used 'neighbor joining' and 'maximum likelihood' methods on whole mitochondrial genome sequences; the consensus phylogenetic trees supported monophyly of the family Cervidae; it was divided into two subfamilies, Cervinae and Capreolinae, and five tribes, Cervini, Muntiacini, Alceini, Odocoileini, and Capreolini. The evolutionary structure of the family Cervidae can be reconstructed by phylogenetic analysis based on whole mitochondrial genomes; which method could be used broadly in phylogenetic evolutionary analysis of animal taxa.

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Section: Discussionsupporting

confidence: 49%

Section: Acta Biologica Hungarica 67 2016supporting

confidence: 53%

Section: Mitogenomic Phylogeny Of the Family Cervidaementioning

confidence: 75%

Section: Acta Biologica Hungarica 67 2016mentioning

confidence: 88%

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Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Frank¹,

Barta²,

Bana³

et al. 2016

Acta Biologica Hungarica

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show abstract

“…Based on cytogenetic evidence for homology between cattle (Bos taurus) and white-tailed deer chromosomes, they demonstrated that a divergent genome may be used for estimation of the relative distribution and density of de novo contigs as well as putative SNPs for species without draft genome assemblies. Yang et al (2012a) and Pan et al (2013) determined complete mitochondrial genome of the Chinese Sika deer -Sichuan Sika deer (Cervus nippon sichuanicus) and the South China Sika deer (Cervus nippon kopschi). Kim et al (2013) completed mitochondrial genome of a water deer subspecies (Hydropotes inermis argyropus).…”

Section: Characterization Of Deer Species Based On Mitochondrial Dna mentioning

confidence: 99%

Advances in genomic sequencing using Bovine SNP BeadChip in Deer

Kasarda

Moravčíková²,

Trakovická³

2014

Acta fytotechn. zootechn.

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Establishment of deer heart identification method and development of the detection kit based on mitochondrial cytochrome B gene

Wang,

Zhang,

2023

Electronic Journal of Biotechnology

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The complete mitochondrial genome of the Chinese Sika deer (Cervus nipponTemminck, 1838), and phylogenetic analysis among Cervidae, Moschidae and Bovidae

Cited by 15 publications

References 34 publications

Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Advances in genomic sequencing using Bovine SNP BeadChip in Deer

Establishment of deer heart identification method and development of the detection kit based on mitochondrial cytochrome B gene

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