The complete chloroplast genome sequence of Docynia indica (Wall.) Decne

Abstract

Docynia indica (Wall.) Decne. (Duo-Yi) is a high economic value for exploitation and utilization wild fruit tree species with edible and medicinal values in southwest China. We have sequenced the chloroplast genome to facilitate genetic improvement of this species and to assess phylogenetic relationships among major lineages. The result showed that the total chloroplast genome size of Duo-Yi was 159,546 bp in length, containing a pair of inverted repeats (IRs) of 26,369 bp, which were separated by a large single copy (LSC) and small single copy (SSC) of 87,650 bp and 19,158 bp, respectively. The overall guanine-cytosine (GC) content of the chloroplast genome was 36.6%. There were 125 genes in the chloroplast genome, which including 82 protein-coding genes, 35 transfer RNA genes, and 8 ribosomal RNA genes. Among these genes, there were 14 genes with one intron and 3 genes have two introns. The result of phylogenetic analysis indicated that the Duo-Yi was closely related to the genera of Malus doumeri.

The complete chloroplast genome sequence of Ormosia boluoensis

“…Until now, there have been no genomic studies of O. boluoensis and the complete genomic sequence of its chloroplast (cp) has not previously been reported. Complete cp genomes are useful tools that provide information regarding phylogenetic relationships, species identification and germplasm diversity (Wang et al 2019). Therefore, in this study, we reported the complete genomic sequence of the cp from O. boluoensis using high-throughput sequencing approaches.…”

“…Complete cp genomes are useful tools that provide information regarding phylogenetic relationships, species identification and germplasm diversity (Wang et al. 2019 ). Therefore, in this study, we reported the complete genomic sequence of the cp from O. boluoensis using high-throughput sequencing approaches.…”

Phylogeny of Maleae (Rosaceae) Based on Complete Chloroplast Genomes Supports the Distinction of Aria, Chamaemespilus and Torminalis as Separate Genera, Different from Sorbus sp.

“…In this study, we present a new assembly of the complete chloroplast genome of Sorbus aucuparia L., another representative of Sorbus s.s. Given the availability of complete chloroplast genomes of several Maleae species assembled recently by various research groups [8,[13][14][15][16][17][18], we attempted to reconstruct the phylogeny of the Maleae tribe based on complete chloroplast genomes, with a special focus on the relationships among the genera formerly assigned to Sorbus s.l.…”

The complete chloroplast genome sequence of Ficus tikoua Bur. and its phylogenetic analysis

“…Previous studies were focused on its quality standard, chemical composition, and pharmacological activities (Wei et al 2012;Jiang et al 2013). It is well known that the chloroplast (cp) genomes have been widely applied to molecular identification and phylogenetic evolution of plant species (Wang et al 2019). However, up to now, no cp genome of F. tikoua has been reported in NCBI and other databases.…”