Torreya parvifolia
(
Torreya
, Taxaceae) is endemic in Sichuan, China. It consisted of an extremely small population with less than 100 wild individuals. In this study, the complete chloroplast genome of
T. parvifolia
was assembled using the Illumina data. The complete chloroplast genome of
T. parvifolia
is 137,106 bp in length. The genome consists of 119 genes in total, including 82 protein-coding genes (PCGs), 4 ribosomal RNA (rRNA) genes, and 33 transfer RNA (tRNA) genes. Phylogenetic analysis indicated that
T. parvifolia
was closely related to
T. fargesii
,
T. nucifera
, and
T. fargesii
var.
yunnanensis
with strong support.