The complete chloroplast genome sequence of the threatened trident maple <i>Acer buergerianum</i> (Aceraceae)

Xu, Jianxin; Wu, Haibo; Gao, Li‐Zhi

doi:10.1080/23802359.2017.1325345

Cited by 8 publications

(8 citation statements)

References 8 publications

(10 reference statements)

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“…The largest and smallest chloroplast genomes of Acer miaotaiense were found in Zhangliangmiao, Liuba country (ZL) and Dianbingchang, Meixian country (DB) with lengths of 156,260 bp and 156,204 bp, respectively ( Table 1 ). The structure of the cp genome of Acer miaotaiense was similar to those from the other Acer species, such as Acer buergerianum [ 15 ], Acer morrisonense [ 16 ], and Acer davidii [ 17 ], in terms of genome size and the length of the four main regions.…”

Section: Resultsmentioning

confidence: 64%

“…These results showed that, for the cp genome of Acer miaotaiense , the number of genes and protein-coding genes is quite conserved across the five studied geographical locations. The total number of genes was slightly lower than that for some Acer species, such as Acer davidii Franch (134 genes) [ 17 ], and Acer buergerianum (134 genes) [ 15 ], but with a higher number of protein-coding genes. During the evolution of angiosperms, multiple gene losses remain an ongoing process [ 10 , 18 , 19 , 20 ].…”

Section: Resultsmentioning

confidence: 99%

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Characterization of the Chloroplast Genome Sequence of Acer miaotaiense: Comparative and Phylogenetic Analyses

Zhao

et al. 2018

Molecules

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Acer miaotaiense is an endangered species within the Aceraceae family, and has only a few small natural distributions in China’s Qingling Mountains and Bashan Mountains. Comparative analyses of the complete chloroplast genome could provide useful knowledge on the diversity and evolution of this species in different environments. In this study, we sequenced and compared the chloroplast genome of Acer miaotaiense from five ecological regions in the Qingling and Mashan Regions of China. The size of the chloroplast genome ranged from 156,260 bp to 156,204 bp, including two inverted repeat regions, a small single-copy region, and a large single-copy region. Across the whole chloroplast genome, there were 130 genes in total, and 92 of them were protein-coding genes. We observed four genes with non-synonymous mutations involving post-transcriptional modification (matK), photosynthesis (atpI), and self-replication (rps4 and rpl20). A total of 415 microsatellite loci were identified, and the dominant microsatellite types were composed of dinucleotide and trinucleotide motifs. The dominant repeat units were AT and AG, accounting for 37.92% and 31.16% of the total microsatellite loci, respectively. A phylogenetic analysis showed that samples with the same altitude (Xunyangba, Ningshan country, and Zhangliangmiao, Liuba country) had a strong bootstrap value (88%), while the remaining ones shared a similar longitude. These results provided clues about the importance of longitude/altitude for the genetic diversity of Acer miaotaiense. This information will be useful for the conservation and improved management of this endangered species.

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Section: Resultsmentioning

confidence: 64%

Section: Resultsmentioning

confidence: 99%

Characterization of the Chloroplast Genome Sequence of Acer miaotaiense: Comparative and Phylogenetic Analyses

Zhao

et al. 2018

Molecules

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“…wangii has 135 [58], A . buergerianum has 134 [59], and in Meliaceae species has 112 genes [60], which is from the same order Sapindales [51]. Camellia species contains 146 genes [60].…”

Section: Resultsmentioning

confidence: 99%

First complete chloroplast genomics and comparative phylogenetic analysis of Commiphora gileadensis and C. foliacea: Myrrh producing trees

Khan¹,

Asaf²,

Khan³

et al. 2019

PLoS ONE

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Commiphora gileadensis and C. foliacea (family Burseraceae) are pantropical in nature and known for producing fragrant resin (myrrh). Both the tree species are economically and medicinally important however, least genomic understanding is available for this genus. Herein, we report the complete chloroplast genome sequences of C. gileadensis and C. foliacea and comparative analysis with related species (C. wightii and Boswellia sacra). A modified chloroplast DNA extraction method was adopted, followed with next generation sequencing, detailed bioinformatics and PCR analyses. The results revealed that the cp genome sizes of C. gileadensis and C. foliacea, are 160,268 and 160,249 bp, respectively, with classic quadripartite structures that comprises of inverted repeat’s pair. Overall, the organization of these cp genomes, GC contents, gene order, and codon usage were comparable to other cp genomes in angiosperm. Approximately, 198 and 175 perfect simple sequence repeats were detected in C. gileadensis and C. foliacea genomes, respectively. Similarly, 30 and 25 palindromic, 15 and 25 forward, and 20 and 25 tandem repeats were determined in both the cp genomes, respectively. Comparison of these complete cp genomes with C. wightii and B. sacra revealed significant sequence resemblance and comparatively highest deviation in intergenic spacers. The phylo-genomic comparison showed that C. gileadensis and C. foliacea form a single clade with previously reported C. wightii and B. sacra from family Burseraceae. Current study reports for the first time the cp genomics of species from Commiphora, which could be helpful in understanding genetic diversity and phylogeny of this myrrh producing species.

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“… 2019 ), and A. buergerianum (Xu et al. 2017 ). In the present study, the complete chloroplast genome of A. ginnala was assembled, annotated, and analyzed phylogenetically.…”

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confidence: 99%

“…The chloroplast genome is highly conserved among plant species and can provide important molecular data for phylogenetic research, biogeographical research, and genetic diversity research (Abla et al 2019). At present, chloroplast sequencing and annotation of several Acer plants have been conducted, including A. cinnamomifolium , A. truncatum (Chen, Liu et al 2019), and A. buergerianum (Xu et al 2017). In the present study, the complete chloroplast genome of A. ginnala was assembled, annotated, and analyzed phylogenetically.…”

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confidence: 99%

Complete chloroplast genome sequence of Acer ginnala, an important ornamental tree

Yang

Zha

Cao

et al. 2020

Mitochondrial DNA Part B

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Acer ginnala is a woody Acer plant with high ornamental value. In the present study, the chloroplast genome of A. ginnala was determined, annotated, and analyzed phylogenetically. The total chloroplast genome was 156,184 bp in length, consisting of a large single-copy region (86,525 bp), a small single-copy region (18,947 bp), and two inverted repeat regions (25,356 bp). The complete chloroplast genome contains 133 genes, including 90 protein-coding genes, 36 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis based on the sequences of 49 common proteins from 25 species demonstrated a close relationship between A. ginnala and three others Acer plants species including A. truncatum, A. miaotaiense , and A.catalpifolium. This study will help to understand the phylogenetic position of A. ginnala in genus Acer.

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The complete chloroplast genome sequence of the threatened trident maple Acer buergerianum (Aceraceae)

Cited by 8 publications

References 8 publications

Characterization of the Chloroplast Genome Sequence of Acer miaotaiense: Comparative and Phylogenetic Analyses

Characterization of the Chloroplast Genome Sequence of Acer miaotaiense: Comparative and Phylogenetic Analyses

First complete chloroplast genomics and comparative phylogenetic analysis of Commiphora gileadensis and C. foliacea: Myrrh producing trees

Complete chloroplast genome sequence of Acer ginnala, an important ornamental tree

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