The complete chloroplast genome sequence of <i>Garcinia pedunculata</i>

Yang, Deok‐Chun; Qiu, Qiong; Xu, Linhong; Xu, Ying; Wang, Yi

doi:10.1080/23802359.2019.1699470

Cited by 2 publications

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References 6 publications

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“…The infA is usually located between rpl36 and rps8 , whereas rpl32 is usually located between ndhF and trnL-UAG 50 . Instead, the annotated infA was located within rpoC1 gene ( G. anomala: MW582313 49 ; G. pedunculata: NC048983 51 ) while, rpl32 of G. pedunculata was located between rpoB and trnC-GCA . Hence, both genes were actually not found in the Garcinia plastomes, in agreement with a previous report that both infA and rpl32 genes were lost in G. mangostana 52 .…”

Section: Discussionmentioning

confidence: 99%

Plastomes of Garcinia mangostana L. and comparative analysis with other Garcinia species

Wee

Muhammad

Subbiah

et al. 2022

Preprint

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The two varieties of mangosteen (Garcinia mangostana L.) cultivated in Malaysia are known as Manggis and Mesta. The latter is preferred for its flavor, texture, and seedlessness. Here, we report a complete plastome (156,580 bp) of the Mesta variety which was obtained through a hybrid assembly approach using PacBio and Illumina sequencing reads. It encompasses a large single-copy (LSC) region (85,383 bp) and a small single-copy (SSC) region (17,137 bp) that are separated by 27,230 bp of inverted repeat (IR) regions at both ends. The plastome comprises 128 genes, namely 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The plastome of the Manggis variety (156,582 bp) obtained from reference-guided assembly of Illumina reads was found to be nearly identical to Mesta except for two indels and the presence of a single nucleotide polymorphism (SNP). Comparative analyses with other publicly available Garcinia plastomes, including G. anomala, G. gummi-gutta, G. mangostana var. Thailand, G. oblongifolia, G. paucinervis, and G. pedunculata found that the gene content, gene order, and gene orientation were highly conserved among the Garcinia species. Phylogenomic analysis divided the six Garcinia plastomes into three groups with the Mesta and Manggis varieties clustered closer to G. anomala, G. gummi-gutta, and G. oblongifolia, while the Thailand variety clustered with G. pedunculata in another group. These findings serve as future references for the identification of species or varieties and facilitate phylogenomic analysis of lineages from the Garcinia genus to better understand their evolutionary history.

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Section: Discussionmentioning

confidence: 99%

Plastomes of Garcinia mangostana L. and comparative analysis with other Garcinia species

Wee

Muhammad

Subbiah

et al. 2022

Preprint

View full text Add to dashboard Cite

show abstract

“…The infA is usually located between rpl36 and rps8 , whereas rpl32 is usually located between ndhF and trnL-UAG [ 53 ]. Instead, the annotated infA was located within the rpoC1 gene ( G. anomala : MW582313 [ 52 ]; G. pedunculata : NC048983 [ 54 ]), while rpl32 of G. pedunculata was located between rpoB and trnC-GCA . Hence, both genes were actually not found in the Garcinia plastomes, in agreement with a previous report that both infA and rpl32 genes were lost in G. mangostana [ 55 ].…”

Section: Discussionmentioning

confidence: 99%

Plastomes of Garcinia mangostana L. and Comparative Analysis with Other Garcinia Species

Wee

Muhammad

Subbiah

et al. 2023

Plants

View full text Add to dashboard Cite

The two varieties of mangosteen (Garcinia mangostana L.) cultivated in Malaysia are known as Manggis and Mesta. The latter is preferred for its flavor, texture, and seedlessness. Here, we report a complete plastome (156,580 bp) of the Mesta variety that was obtained through a hybrid assembly approach using PacBio and Illumina sequencing reads. It encompasses a large single-copy (LSC) region (85,383 bp) and a small single-copy (SSC) region (17,137 bp) that are separated by 27,230 bp of inverted repeat (IR) regions at both ends. The plastome comprises 128 genes, namely, 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The plastome of the Manggis variety (156,582 bp) obtained from reference-guided assembly of Illumina reads was found to be nearly identical to Mesta except for two indels and the presence of a single-nucleotide polymorphism (SNP). Comparative analyses with other publicly available Garcinia plastomes, including G. anomala, G. gummi-gutta, G. mangostana var. Thailand, G. oblongifolia, G. paucinervis, and G. pedunculata, found that the gene content, gene order, and gene orientation were highly conserved among the Garcinia species. Phylogenomic analysis divided the six Garcinia plastomes into three groups, with the Mesta and Manggis varieties clustered closer to G. anomala, G. gummi-gutta, and G. oblongifolia, while the Thailand variety clustered with G. pedunculata in another group. These findings serve as future references for the identification of species or varieties and facilitate phylogenomic analysis of lineages from the Garcinia genus to better understand their evolutionary history.

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The complete chloroplast genome sequence of Garcinia pedunculata

Cited by 2 publications

References 6 publications

Plastomes of Garcinia mangostana L. and comparative analysis with other Garcinia species

Plastomes of Garcinia mangostana L. and comparative analysis with other Garcinia species

Plastomes of Garcinia mangostana L. and Comparative Analysis with Other Garcinia Species

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