The complete chloroplast genome of the halophyte flowering plant Suaeda monoica from Jeddah, Saudi Arabia

Alshegaihi, Rana M.

doi:10.1007/s11033-023-09069-x

Cited by 2 publications

(1 citation statement)

References 52 publications

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“…Typically, the LSC/IRb boundary is situated on or near rps19, rpl2, or rpl22, while IRb/SSC is generally positioned on ycf1 or between ycf1 and ndhF. The SSC/IRa boundary typically lies on ycf1, and the IRa/LSC boundary usually falls on or near rps19, rpl2, rpl12, and trnH (Alshegaihi, 2024).…”

Section: Adaptive Evolution Analysesmentioning

confidence: 99%

Complete chloroplast genome sequence of Buchanania latifolia (Anacardiaceae): genome structure, and phylogenetic relationships

Mao,

Rao,

Lei

et al. 2024

Preprint

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The chloroplast (cp) genomes are valuable resource with multiple applications, encompassing species identification, phylogenetic reconstruction, and evolutionary investigations. In this study, the complete chloroplast genome sequence of Buchanania latifoliawas de novo sequenced, assembled and annotated. The chloroplast genome of B. latifolia exhibits a typical quadripartite structure, with a total length of 160,088 bp, containing 88 protein-coding sequences (CDS), 37 tRNA genes, and 8 rRNA genes, with an overall GC content of 37.7%. A total of 99 SSR loci and 63 repeat sequences were identified, which can be utilized for marker development, phylogenetic and population studies of B. latifolia. Codon usage analysis revealed a preference for Leu codons ending with A/U. Additionally, the study investigated IR boundaries, DNA polymorphism, positive selection suites, and phylogenetic position. Comparative analysis with five other species from the Anacardiaceae family confirmed the nearly identical and highly conserved chloroplast genome features of B. latifolia, which can be valuable for understanding the plastid evolution and evolutionary relationships within Anacardiaceae. Phylogenetic analysis reveals that B. latifoliais positioned at the base of Anacardiaceae, sister to Choerospondias axillaris, Lannea coromandelica, and Sclerocarya birrea. These findings could provide important genetic information for further research into breeding of Anacardiaceae, phylogeny, and evolution of B. latifolia.

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Section: Adaptive Evolution Analysesmentioning

confidence: 99%

Complete chloroplast genome sequence of Buchanania latifolia (Anacardiaceae): genome structure, and phylogenetic relationships

Mao,

Rao,

Lei

et al. 2024

Preprint

View full text Add to dashboard Cite

show abstract

Complete chloroplast genome sequence of Buchanania latifolia: genome structure, and phylogeny of basal Anacardiaceae family relationships

Mao,

Rao,

Lei

et al. 2024

Preprint

View full text Add to dashboard Cite

The chloroplast (cp) genomes are valuable resource with multiple applications, encompassing species identification, phylogenetic reconstruction, and evolutionary investigations. In this study, the complete chloroplast genome sequence of Buchanania latifolia was de novo sequenced, assembled and annotated. The chloroplast genome of B. latifolia exhibits a typical quadripartite structure, with a total length of 160,088 bp, containing 88 protein-coding sequences (CDS), 37 tRNA genes, and 8 rRNA genes, with an overall GC content of 37.7%. A total of 99 SSR loci and 63 repeat sequences were identified, which can be utilized for marker development, phylogenetic and population studies of B. latifolia. Codon usage analysis revealed a preference for Leu codons ending with A/U. Additionally, the study investigated IR boundaries, DNA polymorphism, positive selection suites, and phylogenetic position. Comparative analysis with five other species from the Anacardiaceae family confirmed the nearly identical and highly conserved chloroplast genome features of B. latifolia, which can be valuable for understanding the plastid evolution and evolutionary relationships within Anacardiaceae. Phylogenetic analysis reveals that B. latifolia is positioned at the base of Anacardiaceae, sister to Choerospondias axillaris, Lannea coromandelica, and Sclerocarya birrea. These findings could provide important genetic information for further research into breeding of Anacardiaceae, phylogeny, and evolution of B. latifolia.

show abstract

The complete chloroplast genome of the halophyte flowering plant Suaeda monoica from Jeddah, Saudi Arabia

Cited by 2 publications

References 52 publications

Complete chloroplast genome sequence of Buchanania latifolia (Anacardiaceae): genome structure, and phylogenetic relationships

Complete chloroplast genome sequence of Buchanania latifolia (Anacardiaceae): genome structure, and phylogenetic relationships

Complete chloroplast genome sequence of Buchanania latifolia: genome structure, and phylogeny of basal Anacardiaceae family relationships

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