Background
Agricultural insects are one of the major threats to crop yield. It is a known fact that pesticide application is an extensive approach to eliminate insect pests, and has severe adverse effects on environment and ecosystem; however, there is lack of knowledge whether it could influence the physiology and metabolic processes in plants.
Results
Here, we systemically analyzed the transcriptomic changes in rice after a spray of two commercial pesticides, Abamectin (ABM) and Thiamethoxam (TXM). We found only a limited number of genes were altered by two pesticide applications, indicating that pesticides cannot dramatically affect the performance of rice. Nevertheless, we characterized some Differentially Expressed Genes (DEGs) and long non-coding RNAs (lncRNAs) that can be impacted by both two pesticides, suggesting their certain involvement in response to farm chemicals. Moreover, we detected several alternative splicing (AS) alterations accompanied by host gene expression, illustrating a potential role of AS in control of gene transcription during insecticide spraying. Finally, a couple of transposons were identified significantly changed with pesticides treatment, leading to a variation in adjacent coding or non-coding transcripts.
Conclusions
Altogether, our results provide valuable insights into pest management through appropriate timing and balanced mixture over sustainable application of field drugs.