“…To target counterparts of the MHC-related regions, we selected T. adhaerens scaffolds with highest density of best blast hits-that is, scaffolds in which the proportion of hits of at least one human gene was higher than a given threshold. A density threshold was set from the distribution at 23% to optimize the contrast between the groups, selecting the scaffolds 1, 2, 3,6,7,9,10,12,14,15,22,28,31,34,35,40, and 42 for further analysis. Protein sequences corresponding to the 6721 genes located within these scaffolds were extracted using Ensembl Biomart and blasted back against the human proteome using D-BLAST with an e-value cutoff of 1e-10.…”