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It is known that baculovirus infection promotes high-frequency recombination between its genomes and plasmid DNA during the construction of recombinant viruses for foreign gene expression. However, little is known about the viral genes necessary to promote homologous recombination (HR). We developed an assay to identify viral genes that are necessary to stimulate HR. In this assay, we used two plasmids containing extensive sequence homology that yielded a visible and quantifiable phenotype if HR occurred. The plasmids contained the green fluorescent protein gene (gfp) that was mutated at either the N or the C terminus and a viral origin of DNA replication. When the plasmids containing these mutant gfp genes were transfected into insect cells alone or together, few green fluorescent protein (GFP)-positive cells were observed, confirming that the host cell machinery alone was not able to promote high levels of HR. However, if viral DNA or viral genes involved in DNA replication were cotransfected into cells along with the mutant gfp-containing plasmids, a dramatic increase in GFP-positive cells was observed. The viral genes ie-1, ie-2, lef-7, and p35 were found to be important for efficient HR in the presence of all other DNA replication genes. However, ie-1 and ie-2 were sufficient to promote HR in the absence of other viral genes. Recombination substrates lacking a viral origin of replication had similar genetic requirements for recombination but were less dependent on ie-1. Interestingly, even though HR was stimulated by the presence of a viral origin of DNA replication, virally stimulated HR could proceed in the presence of the DNA synthesis inhibitor aphidicolin.Studies on homologous recombination (HR) among baculovirus genomes in cell culture and in the wild are limited, curtailing our understanding of genetic diversity among baculovirus strains and virus evolution and our ability to design ecologically safe and efficient biological control agents. Recombination of virus genomes within insects results in an increase in virus genetic heterogeneity in wild populations (11-13, 41, 45, 60) and in cell culture (17,23,61,71). Integration of plasmid DNA by nonhomologous recombination into the baculovirus Autographa californica nucleopolyhedrovirus (AcMNPV) DNA has also been observed in cell culture (69). In addition to shedding light on these processes, identification of the viral genes involved in HR may be useful for studying the function of genes in the host organism by specifically targeting genes in insects infected with baculoviruses or other viruses carrying baculovirus recombination-specific genes. For example, gene targeting mediated by baculoviruses in the silkworm Bombyx mori has been successful (72). Also, knowledge of the mechanism of recombination in the host organism may provide a tool to better develop recombination between baculovirus and plasmid DNA after lipofection of insect larvae. The latter has been suggested and investigated to generate recombinant viruses in the event an insect cell line i...
It is known that baculovirus infection promotes high-frequency recombination between its genomes and plasmid DNA during the construction of recombinant viruses for foreign gene expression. However, little is known about the viral genes necessary to promote homologous recombination (HR). We developed an assay to identify viral genes that are necessary to stimulate HR. In this assay, we used two plasmids containing extensive sequence homology that yielded a visible and quantifiable phenotype if HR occurred. The plasmids contained the green fluorescent protein gene (gfp) that was mutated at either the N or the C terminus and a viral origin of DNA replication. When the plasmids containing these mutant gfp genes were transfected into insect cells alone or together, few green fluorescent protein (GFP)-positive cells were observed, confirming that the host cell machinery alone was not able to promote high levels of HR. However, if viral DNA or viral genes involved in DNA replication were cotransfected into cells along with the mutant gfp-containing plasmids, a dramatic increase in GFP-positive cells was observed. The viral genes ie-1, ie-2, lef-7, and p35 were found to be important for efficient HR in the presence of all other DNA replication genes. However, ie-1 and ie-2 were sufficient to promote HR in the absence of other viral genes. Recombination substrates lacking a viral origin of replication had similar genetic requirements for recombination but were less dependent on ie-1. Interestingly, even though HR was stimulated by the presence of a viral origin of DNA replication, virally stimulated HR could proceed in the presence of the DNA synthesis inhibitor aphidicolin.Studies on homologous recombination (HR) among baculovirus genomes in cell culture and in the wild are limited, curtailing our understanding of genetic diversity among baculovirus strains and virus evolution and our ability to design ecologically safe and efficient biological control agents. Recombination of virus genomes within insects results in an increase in virus genetic heterogeneity in wild populations (11-13, 41, 45, 60) and in cell culture (17,23,61,71). Integration of plasmid DNA by nonhomologous recombination into the baculovirus Autographa californica nucleopolyhedrovirus (AcMNPV) DNA has also been observed in cell culture (69). In addition to shedding light on these processes, identification of the viral genes involved in HR may be useful for studying the function of genes in the host organism by specifically targeting genes in insects infected with baculoviruses or other viruses carrying baculovirus recombination-specific genes. For example, gene targeting mediated by baculoviruses in the silkworm Bombyx mori has been successful (72). Also, knowledge of the mechanism of recombination in the host organism may provide a tool to better develop recombination between baculovirus and plasmid DNA after lipofection of insect larvae. The latter has been suggested and investigated to generate recombinant viruses in the event an insect cell line i...
The baculovirus replication factors LEF-1 and LEF-2 of the Autographa californica multinucleocapsid nucleopolyhedrovirus were overexpressed as fusions containing a hemagglutinin (HA) epitope and a HIS 6 tag using recombinant baculoviruses. LEF-1 was purified to near homogeneity and found to have primase activity in an indirect assay employing Escherichia coli DNA polymerase I (Klenow enzyme) and poly(dT) template. The LEF-1 primase products were also directly characterized by electrophoresis in 20% polyacrylamide-8 M urea gels and agarose gels. Primer synthesis was time dependent, and products of several hundred nucleotides or more were observed from the M13 single-stranded DNA (ssDNA) template. The LEF-1 primase was absolutely dependent on divalent cations (Mg 2؉ ), and optimal activity was supported by 10 mM MgCl 2 . An alkaline pH (8.8 to 9.4) was optimal, whereas monovalent salt (KCl) was inhibitory. Mutation of an invariant aspartic acid in a putative primase domain caused LEF-1 activity to be abolished. Upon ultracentrifugation in glycerol gradients, LEF-1 was found to have a sedimentation coefficient of 3S that is consistent with its being present as a monomer. Elution profiles of LEF-1 and LEF-2 from ssDNA-cellulose and DEAE resin suggested that LEF-2 may bind to both DNA and LEF-1.The Baculoviridae are a large and diverse family of rodshaped, enveloped, occluded viruses that are pathogenic for invertebrates, particularly members of the Insecta. They have been reported from over 600 species, most of which are members of the Lepidoptera, Diptera, and Hymenoptera (34). Two genera of baculoviruses have been characterized, and they include the nucleopolyhedroviruses (NPVs) (47), which have numerous virions within large polyhedron-shaped occlusion bodies, and the granuloviruses (52), which commonly have a single virion within small granular occlusion bodies. Baculovirus genomes consist of double-stranded, circular, supercoiled DNA of 100 to 180 kb, depending on the strain of virus (20). Although evidence suggests that baculovirus genomes may replicate via a rolling-circle intermediate (31,42), the mechanisms of initiation, elongation, processing, and maturation have not been determined.Baculovirus DNA replication has been shown to be associated with discrete replication factories in the nuclei of infected cells (41). In addition, a conserved set of genes that are essential or highly stimulatory for transient DNA replication have been identified for Autographa californica multinucleocapsid NPV (AcMNPV) (26, 33), Orgyia pseudotsugata MNPV (OpMNPV) (reviewed in reference 1), and Lymantria dispar MNPV (44). These include genes encoding a DNA polymerase homolog, a DNA helicase homolog, ie-1, a transactivator of early gene transcription, and late expression factors (LEFs) encoded by lef-1, -2, and -3. The DNA polymerase and DNA helicase homologs were subsequently shown to have activities associated with these enzymes (35,36). In addition, lef-3 encodes a product with the properties of a single-stranded DNA (SSB) bi...
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