17• Phosphorus (P) limits primary production in regions of the surface ocean, and 18 many plankton species exhibit specific physiological responses to P-deficiency. 19 The metabolic response of Micromonas pusilla, an ecologically relevant marine 20 photoautotroph, to P-deficiency was investigated using environmental 21 metabolomics and comparative genomics. 22• The concentrations of some intracellular metabolites were elevated in the P-23 deficient cells (e.g., xanthine, inosine) and genes involved in the associated 24 metabolic pathways shared a predicted conserved amino acid motif in the non-25 coding regions of each gene. The presence of the conserved motif suggests that 26 these genes may be co-regulated, and the motif may constitute a regulatory 27 element for binding a transcription factor (i.e., Phosphate starvation response, 28Psr1, first described in the alga, Chlamydomonas reinhardtii). 29• A putative phosphate starvation response gene (psr1-like) was identified in M. 30 pusilla with homology to well characterized psr1/phr1 genes in algae and plants, 31 respectively. This gene appears to be present and expressed in other marine algal 32 taxa (e.g., Emiliania huxleyi) in field sites that are chronically phosphorus-limited. 33• Results from the present study have implications for understanding phytoplankton 34 taxon-specific roles in mediating P cycling in the ocean. 35 36 Key words: Micromonas pusilla, phosphate stress response, marine algae, metabolomics, 37 dissolved organic matter 38 582 analysis.