The APOBEC3B cytidine deaminase is an adenovirus restriction factor

Abstract

Human adenoviruses (HAdVs) are a large family of DNA viruses counting more than a hundred strains divided into seven species (A to G). HAdVs induce respiratory tract infections, gastroenteritis and conjunctivitis. APOBEC3B is a cytidine deaminase that restricts several DNA viruses. APOBEC3B is also implicated in numerous cancers where it is responsible for the introduction of clustered mutations into the cellular genome. In this study, we demonstrate that APOBEC3B is an adenovirus restriction factor acting through a deaminase-dependent mechanism. APOBEC3B introduces C-to-T clustered mutations into the adenovirus genome. APOBEC3B reduces the propagation of adenoviruses by limiting viral genome replication, progression to late phase, and production of infectious virions. APOBEC3B restriction efficiency varies between adenoviral strains, the A12 strain being more sensitive to APOBEC3B than the B3 or C2 strains. In A12-infected cells, APOBEC3B clusters in the viral replication centers. Importantly, we show that adenovirus infection leads to a reduction of the quantity and/or enzymatic activity of the APOBEC3B protein depending on the strains. The A12 strain seems less able to resist APOBEC3B than the B3 or C2 strains, a characteristic which could explain the strong depletion of the APOBEC3-targeted motifs in the A12 genome. These findings suggest that adenoviruses evolved different mechanisms to antagonize APOBEC3B. Elucidating these mechanisms could benefit the design of cancer treatments. This study also identifies adenoviruses as triggers of the APOBEC3B-mediated innate response. The involvement of certain adenoviral strains in the genesis of the APOBEC3 mutational signature observed in tumors deserves further study.

Unbiased and comprehensive identification of viral encoded circular RNAs in a large range of viral species and families

“…The human lung carcinoma cell line A549 (CCL-185 – ATCC) was cultured in DMEM (11965092 – Gibco) supplemented with 10% FBS (10270106 – Gibco). These cells were infected with the human Adenovirus C5 (hAdV C5) (accession number : AC_000008.1 ; VR-5 – ATCC) as described in (30). Lymphoblastoid cell lines (LCLs) were derived from calves developing malignant catarrhal fever (MCF) upon infection with strain C500 of alcelaphine gammaherpesvirus 1 (AlHV-1 ; accession number : KX905135.1) (31, 32).…”

“…The human lung carcinoma cell line A549 (CCL-185 -ATCC) was cultured in DMEM (11965092 -Gibco) supplemented with 10% FBS (10270106 -Gibco). These cells were infected with the human Adenovirus C5 (hAdV C5) (accession number : AC_000008.1 ; VR-5 -ATCC) as described in (30).…”

Differentiation signals induce APOBEC3A expression via GRHL3 in squamous epithelia and squamous cell carcinoma

“…The APOBEC3 enzymes convert deoxycytidine to deoxyuridine in single-stranded DNA (ssDNA), a mutagenic activity that explains at least in part their ability to restrict replication of retroviruses and endogenous retroelements through targeting nascent cDNA during reverse transcription 1,2 . In addition, APOBEC3A and APOBEC3B have evolved functions in the cell nucleus including transcriptional regulation 3,4 and responses to nuclear-resident viruses [5][6][7][8][9][10] . Acquisition of these nuclear functions appears to have come at a cost however, as both APOBEC3A and APOBEC3B have been implicated in generating somatic mutations (mainly C>T transitions and C>G tranversions at TpC sites) in cancer cell genomes, driving cancer development and therapeutic resistance [11][12][13][14][15][16][17][18][19][20][21][22] .…”