We identified the nfsA gene, encoding the major oxygen-insensitive nitroreductase in Escherichia coli, and determined its position on the E. coli map to be 19 min. We also purified its gene product, NfsA, to homogeneity. It was suggested that NfsA is a nonglobular protein with a molecular weight of 26,799 and is associated tightly with a flavin mononucleotide. Its amino acid sequence is highly similar to that of Frp, a flavin oxidoreductase from Vibrio harveyi (B. Lei, M. Liu, S. Huang, and S.-C. Tu, J. Bacteriol. 176:3552-3558, 1994), an observation supporting the notion that E. coli nitroreductase and luminescent-bacterium flavin reductase families are intimately related in evolution. Although no appreciable sequence similarity was detected between two E. coli nitroreductases, NfsA and NfsB, NfsA exhibited a low level of the flavin reductase activity and a broad electron acceptor specificity similar to those of NfsB. NfsA reduced nitrofurazone by a ping-pong Bi-Bi mechanism possibly to generate a two-electron transfer product.The oxygen-insensitive nitroreductase activity in Escherichia coli consists of one major and two minor components (5). The major component is an NADPH-linked enzyme encoded by nfsA, while minor components, encoded by nfsB and an unidentified gene (5, 19), can use both NADH and NADPH as electron donors. We have cloned and mapped nfsB and analyzed biochemical properties of the purified gene product (NfsB) (29). Our analysis suggested that NfsB is similar in sequence and many biochemical properties to FRase I, the major flavin reductase in Vibrio fischeri (31). NfsB was also found to have a low level of flavin reductase activity (29). Furthermore, a single amino acid substitution of Phe-124 of NfsB changed NfsB into an FRase I-like flavin reductase whose activity was three times higher than that of the authentic FRase I (28). Thus, it is reasonable to assume that genes coding for V. fischeri FRase I and E. coli NfsB nitroreductase are derivatives of a common progenitor gene. Since luminescent bacteria contain several species of flavin reductase (9, 30, 31) and nitroreductase in E. coli forms a family consisting of functionally redundant members (5), as with the NfsB-FRase I pair (29, 31), other nitroreductase members in E. coli might have their counterparts in the flavin reductase family of luminescent bacteria.To clarify the evolutionary and biochemical relationships between flavin reductases of luminescent bacteria and E. coli nitroreductases, gene cloning and biochemical characterization of E. coli nitroreductases other than NfsB may be necessary. Here, we identified the nfsA gene, encoding the major nitroreductase in E. coli, and characterized its gene product, NfsA.Our results showed NfsA nitroreductase to be a flavoprotein associated tightly with flavin mononucleotide (FMN) and to be the ortholog in E. coli of Frp, a flavin oxidoreductase from Vibrio harveyi (11,12,18), an observation supporting a close evolutionary relation between E. coli nitroreductase and luminescent-bacterium flav...