The relationship between heterogeneous nuclear RNA (hnRNA) and messenger RNA (mRNA) synthesis has been studied as a function of the development of the sea urchin embryo through the use of methyl incorporation. Several parameters in the metabolism of capped hnRNA and mRNA of early blastula and late gastrula stages have been investigated by measurin,g the kinetics of transfer of methyl groups from S-adenosylmethionine t o the 5 cap structures in nuclear and cytoplasmic RNA:1) The rate constants for the decay of hnRNA caps and the synthesis of mRNA caps are equal t o within experimental error. This equality indicates a flux of precursor hnRNA caps to mRNA caps with a very high degree of conservation of the hnRNA caps. This conservation holds for each embryonic stage.2 ) From literature data on the labeling kinetics of GTP and mRNA, we have calculated the decay constant of a putative mRNA precursor component of hnRNA. The value of this constant is very close t o that for the decay constant of hnRNA caps. Hence, all hnRNA caps and some portion of their associated hnRNA sequences behave kinetically as the pre-mRNA fraction. This kinetically ascribed pre-mRNA comprises approximately 30% of the hnRNA mass.3) The part of the hnRNA which does not serve as precursor t o mRNA turns over at least twice as rapidly as the pre-mRNA fraction. 4) During development from early blastula to late gastrula, the rate of hnRNA cap synthesis drops from 2 X 1 O3 molecules/min/cell to half of this value. This decline is parallel t o the decline in total hnRNA synthesis and thereby confirms the constant degree of capping of hnRNA, as previously reported. We infer that the pre-mRNA fraction of hnRNA remains nearly constant during this developmental period. [6] as well as sets of single-copy sequences [ 7 ] . Hence, changes in the production of mRNA appear to involve transcriptional and, to a larger extent, posttranscriptional processes. To d understand the regulation of niRNA synthesis as a function of embryonic development, it is important t o study the relationship between hnRNA and mRNA synthesis, determine the nature of the fraction of hnRNA which is pre-mRNA and whether or not this fraction changes quantitatively during development,The generation of mRNA molecules from eukaryotic transcripts is now seen to be complicated by the conservation, splicing and ligating of selected sequences [8-151 . In order t o evaluate the relationship between entire hnRNA and mRNA populations, the use of a general reference structure common to these molecules appears to be required. The 5' terminal cap may be taken as such a structure, because almost all mRNA molecules are characteristically capped, as shown in mammalian cells [ 16, 171 and sea urchin embryos [18]. Furthermore, the 5' cap structure may be strictly characteristic of premRNA if, as demonstrated in mouse L-cell fibroblasts [19] , hnRNA caps are conserved in the processing to form capped mRNA. In the present study we have measured the rate constants for the synthesis and decay of hnRNA cap...