2019
DOI: 10.1016/j.neuroimage.2019.04.067
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Test-retest reliability of Diffusion Tensor Imaging metrics in neonates

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Cited by 33 publications
(48 citation statements)
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“…Next, we corrected the data for eddy currents using FSL ( Andersson and Sotiropoulos, 2016 ). Correlation to minor residual motion (after dtiprep) was assessed in our prior work ( Merisaari et al., 2019 ) and they did not bias the estimates. Finally, we processed the 4D diffusion dataset with FSL’s dtifit, using the brain mask to limit the modeling to brain tissue only.…”
Section: Methodsmentioning
confidence: 99%
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“…Next, we corrected the data for eddy currents using FSL ( Andersson and Sotiropoulos, 2016 ). Correlation to minor residual motion (after dtiprep) was assessed in our prior work ( Merisaari et al., 2019 ) and they did not bias the estimates. Finally, we processed the 4D diffusion dataset with FSL’s dtifit, using the brain mask to limit the modeling to brain tissue only.…”
Section: Methodsmentioning
confidence: 99%
“…The combined data now included a variable number of diffusion encoding directions, and those containing less than 40 diffusion encoding directions were excluded from later analyses. Finally, directions in excess to 40 were removed, while always maximizing the angular resolution ( Merisaari et al., 2019 ), so that each participant now had exactly 40 diffusion encoding directions in their data. Finally, the 3D distribution of available diffusion encoding directions was assured to be even, as per planned coverage of the sequences and visual inspection of the distributions after preprocessing ( Roalf et al., 2016 ).…”
Section: Methodsmentioning
confidence: 99%
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“…Diffusion tensor imaging (DTI) data from brain MRI were obtained to determine the effects of treatment on the white matter integration. Fractional anisotropy (FA) values were calculated by a voxel-based approach using the Tract-Based Spatial Statistics tool in an automated process [46,47]. There are a total of 17 different white-mater tracts-single corpus callosum and bilateral fibers of eight tracts such as the anterior thalamic radiation (ATR), the cingulum in the cingulate cortex area, the cingulum in the hippocampal area, the corticospinal tract, the inferior fronto-occipital fasciculus, the superior and the inferior longitudinal fasciculus, and the uncinate fasciculus (Additional file 3)from JHU white matter tractography atlases [48].…”
Section: Imaging Studies and Electroencephalogram (Eeg)mentioning
confidence: 99%
“…The intraclass correlation (ICC) was also used to evaluate the reliability of the entropy calculation of each functional network by comparing the variability of entropy of the two scans of the same subject to the total variation across all subjects (for resting state and for task performing) using a Microsoft Excel Add-in to calculate ICC (3,1) (Merisaari et al, 2019).…”
Section: Paired T-test and Reliability Evaluationmentioning
confidence: 99%