Test documentation for the GENII Software Version 1.485

Rittmann, P.D.

doi:10.2172/10116371

Cited by 44 publications

(58 citation statements)

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“…The Bayesian clustering approach implemented in the STRUCTURE (ver. 2.3.1) software (Pritchard, 2007) was utilized to assess the population's genetic structure. K values were tested from one to ten with ten independent runs for each K and 500,000 steps followed by 106 iterations for the length of the burn-in.…”

Section: Discussionmentioning

confidence: 99%

Genetic diversity of longjack (Eurycoma longifolia Jack) distributed in Thua Thien Hue, Vietnam

Van

Nguyen

Morgentern

et al. 2023

Preprint

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Longjack (E. longifolia Jack) is one of the important medicinal plants, distributed naturally in the mountainous and sandy areas of Vietnam. The main objective of this study was to evaluate the genetic diversity within and among four longjack populations in Thua Thien Hue with a total of 276 individuals based on the markers as random amplified polymorphic DNA (RAPD), start codon targeted (SCoT), and branch point single sequences (BPS). The analysis of polymorphic information content (PIC), effective multiplex ratio (EMR), marker index (MI), and resolving power (Rp) showed markers SCoT and BPS are more informative than RAPD markers. Combining the data of these markers indicated that genetic diversity (He) and Shannon index (I) are relatively low, at only 0.17 and 0.28, respectively. The analysis of molecular variance (AMOVA) revealed that genetic variation was greater within populations than between them, 89% vs 11%. A Bayesian cluster analysis (STRUCTURE) showed the number of genetic groups was two (K = 2), similar to the results of Principle Coordinate Analysis (PCoA) and Ward’s method. The Mantel test also exhibited a positive correlation of the geographical, elevational factors, morphological characteristics with the genetic variation.

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Section: Discussionmentioning

confidence: 99%

Genetic diversity of longjack (Eurycoma longifolia Jack) distributed in Thua Thien Hue, Vietnam

Van

Nguyen

Morgentern

et al. 2023

Preprint

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“…Wright's pairwise F ST was calculated between each site using FSTAT 2.9.3.2 (Goudet 1995). The programs Structure 2.3.4 and Tess 2.3 were utilised to compare any population structure detected across the dataset, and spatial coordinate information for each sample was included in Tess to assist in assigning genetic clusters (Pritchard et al 2003;Chen et al 2007). An admixture model with correlated allele frequencies was assumed in Structure, with an initial burn-in of 300,000 and 700,000 Monte Carlo Markov Chain (MCMC) repetitions, and 15 iterations per K, ranging from K = 1-15 to reflect the number of sites sampled.…”

Section: Discussionmentioning

confidence: 99%

Genetic analysis of hog deer (Axis porcinus) in Victoria, Australia, and its applications to invasive species and game management

Hill

Murphy

Toop³

et al. 2022

Eur J Wildl Res

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Hog deer were introduced to Australia in the 1860s, where they have spread across the Gippsland region of Victoria. Due to its status as an introduced species and an important game animal within Victoria, management of the species is complex. Given this complexity, genetic studies can provide important information regarding population structure and diversity which can assist in controlling problematic populations of hog deer, while also ensuring viable game stock in sites managed as game reserves. The aim of this study was to investigate the population genetic structure and diversity of the Victorian hog deer 150 years after introduction using short tandem repeats (STRs). Hog deer samples were collected across 15 sites of differing management regimes in the Gippsland region of Victoria and genotyped for 13 polymorphic STR loci. Up to four distinct genetic clusters were identified across the sites sampled, suggesting that despite low observed genetic diversity, population structure is present across their range. It was also possible to detect evidence of recent translocations among populations. This study suggests that the presence of distinct genetic clusters may enable management of separate genetic units, considering invasive species and game management objectives.

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“…Percentages of correct population assignment ranged from 52.6% (DUN) to 100.0% (DET, PÉL) and did not depend on population sample size (r = -0.456, p = 0.152, n = 7). Following the standard procedure (Pritchard 2000(Pritchard , 2004 to infer the most likely number of populations inherent in our data set, we concluded that K = 5 populations. However, the ΔK values for each K between 2 and 7 (K = 2: 1.21; K = 3: 15.24; K = 4: 25.84; K = 5: 13.49; K = 6: 1.83; K = 7: 2.13) suggested that K = 4 was the most likely number of populations (see…”

Section: Genetic Variation and Hardy-weinberg Equilibriummentioning

confidence: 97%

Environmental factors and intrinsic processes affecting habitat use of European ground squirrels (Spermophilus citellus): putting science into conservation practice

Gedeon¹

2012

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Head of Ph.D. Program: Dr. Ádám Miklósi -Budapest, 2011 - I. AcknowledgementsFollowing the general guideline, I will try to keep this section short. Not because it is less important than the other parts, but because I truly believe that all people who contributed to this dissertation know exactly how grateful I have always been for their work or encouraging words or for their mere existence supporting me along the road for several years. I do not think I have been a regular or typical Ph.D. student. First of all, I have been working for a living in a regular workplace while I was doing my scientific work. Secondly, as I have a beautiful family, whom I love so much, they sometimes distracted my attention. I think it happens frequently and normally. Finally, I consider myself a real generalist in every aspect of life. Consequently, believing in me or in my abilities to succeed sooner or later, or believing that finally I would be able to produce something worthwhile might have been a challenge.Eventually, herebelow come the acknowledgements, which is rather a list of good, encouraging, motivating, enthusiastic, open-minded, flexible, helpful, and friendly people.First and foremost I want to thank my local and remote supervisors Vilmos Altbäcker and Lee C. Drickamer. I am particulary grateful to Lee who took everything I asked from him voluntarily. I also want to thank a few other scientists who had major impact on this thesis via common publications, scientific cooperation and/ or fellowship (in alphabetical order): Miklós

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Test documentation for the GENII Software Version 1.485

Abstract: I DEc 12 -ENGINEERING DATA TRANSMITTAL 35%\hbc\ . a \ 2. To: (Receiving Organization) Risk Methodology and P D & ' i h 12-6-59 Signature of EDT Date Originator BD-7400-172-2 (04/94) GEF097 BD- 7400-172-1 (02/89) ..

Cited by 44 publications

References 0 publications

Genetic diversity of longjack (Eurycoma longifolia Jack) distributed in Thua Thien Hue, Vietnam

Genetic diversity of longjack (Eurycoma longifolia Jack) distributed in Thua Thien Hue, Vietnam

Genetic analysis of hog deer (Axis porcinus) in Victoria, Australia, and its applications to invasive species and game management

Environmental factors and intrinsic processes affecting habitat use of European ground squirrels (Spermophilus citellus): putting science into conservation practice

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