Putative TTAGGG repeat-binding factor (TRF) homologues in the genomes of Trypanosoma brucei, Trypanosoma cruzi, and Leishmania major were identified. They have significant sequence similarity to higher eukaryotic TRFs in their C-terminal DNA-binding myb domains but only weak similarity in their N-terminal domains. T. brucei TRF (tbTRF) is essential and was shown to bind to duplex TTAGGG repeats. The RNA interferencemediated knockdown of tbTRF arrested bloodstream cells at G 2 /M and procyclic cells partly at S phase. Functionally, tbTRF resembles mammalian TRF2 more than TRF1, as knockdown diminished telomere single-stranded G-overhang signals. This suggests that tbTRF, like vertebrate TRF2, is essential for telomere end protection, and this also supports the hypothesis that TRF rather than Rap1 is the more ancient DNA-binding component of the telomere protein complex. Identification of the first T. brucei telomere DNAbinding protein and characterization of its function provide a new route to explore the roles of telomeres in pathogenesis of this organism. This work also establishes T. brucei as an attractive model for telomere biology.Telomeres are specialized protein-DNA complexes at the ends of eukaryotic chromosomes. Telomere DNA generally consists of simple, repetitive, TG-rich sequences that are maintained by telomerase (5) and end with a single-stranded G-rich overhang (78). A specialized telomere structure, the T loop, formed by the invasion of telomere G overhangs into the telomeric double-stranded region, in mammals, hypotrichous ciliates, and Trypanosoma brucei has been identified (26,51,53). It is hypothesized that hiding the telomere single-stranded G overhangs in a T-loop structure helps to protect the telomere ends.Proteins that bind to duplex or single-stranded telomere DNA are integral components of the telomere complex and play critical roles in both telomere length regulation and end protection (36). In mammalian cells, two paralogues, TT AGGG repeat-binding factor 1 (TRF1) and TRF2, bind duplex TTAGGG repeats (4,9,12). Both TRF1 and TRF2 have a C-terminal myb motif for DNA binding (3, 9) and an upstream TRF homology (TRFH) domain for homodimerization (24). However, the N termini are quite different: TRF1 is acidic, while TRF2 is basic. Mammalian TRF1 negatively regulates telomere length through a telomerase-dependent pathway (61, 75), whereas TRF2 is involved in both telomere length regulation (38, 61) and telomere end protection (17). Removal of TRF2 from telomeres by overexpression of a dominantnegative mutant of TRF2 resulted in an at least 30%