3Intercortical connectivity is important for higher cognitive brain functions by providing 4 the basis for integrating information from both hemispheres. We show that ablation of 5 the neurodevelopmental disorder associated bHLH factor Tcf4 results in complete 6 loss of forebrain commissural systems in mice. Applying a new bioinformatic strategy 7 integrating transcription factor expression levels and regulon activities from single cell 8 RNA-sequencing data predicted a TCF-4 interacting transcription factor network in 9 intercortical projection neurons regulating commissure formation. This network 10 comprises a number of regulators previously linked to the pathogenesis of intellectual 11 disability, autism-spectrum disorders and schizophrenia, e.g. Foxg1, Sox11 and 12Brg1. Furthermore, we demonstrate that TCF-4 and SOX11 biochemically interact 13 and cooperatively control commissure formation in vivo, and regulate the 14 transcription of genes implied in this process. Our study provides a regulatory 15 transcriptional network for the development of interhemispheric connectivity with 16 potential pathophysiological relevance in neurodevelopmental disorders. 17 18 19 mice is associated with callosal dysgenesis indicating that Tcf4 is part of a conserved 53 genetic network controlling the formation of callosal connections (Jung et al. 2018). 54 TCF-4 belongs to the class I basic basic Helix-Loop-Helix (bHLH) transcription factor 55 family and its transcriptional output is highly dependent on its interaction partners. 56Traditionally, it is assumed that TCF-4 executes its function through dimerization with 57 proneural class II bHLH TFs (Bertrand et al. 2002;Massari and Murre 2000). A 58 recent in vitro study, however, proposed that TCF-4 may be able to interact with a 59 variety of transcriptional regulators outside of the traditional interaction partners of the 60 bHLH class (Moen et al. 2017). TCF-4-interacting transcription factors in the 61 regulation of interhemispheric connectivity have not been identified. Such 62 identification is hampered by the technical challenges to perform unbiased in vivo 63interactome analyses in a cell type specific manner. 64Here, we generated homozygote Tcf4 knockout (Tcf4KO) mice to further validate the 65 role of TCF-4 in the establishment of interhemispheric connectivity. We report that 66 loss of Tcf4 results in the complete agenesis of forebrain commissures. Using single-67 cell RNA sequencing (scRNA-seq) followed by the integration of transcription factor 68 expression levels and regulon activities we uncover a TCF-4 interacting transcription 69 factor network for commissure development in Satb2 expressing neurons. 70Surprisingly, this transcription factor network involves numerous transcription factors 71 outside the bHLH class. Similar to TCF-4, these interactors are often associated to 72 neurodevelopmental disorders such as intellectual disability, autism and 73 schizophrenia. Further analysis of the interaction between TCF-4 and the regulator 74 SOX11 uncovered a syner...