Task-Oriented Comparison of Power Spectral Density Estimation Methods for Quantifying Acoustic Attenuation in Diagnostic Ultrasound Using a Reference Phantom Method
Abstract:Reported here is a phantom-based comparison of methods for determining the power spectral density of ultrasound backscattered signals. Those power spectral density values are then used to estimate parameters describing α(f), the frequency dependence of the acoustic attenuation coefficient. Phantoms were scanned with a clinical system equipped with a research interface to obtain radiofrequency echo data. Attenuation, modeled as a power law α(f)=α0fβ, was estimated using a reference phantom method. The power spe… Show more
“…The power spectrum at a particular time point t 0 is given by an average over K tapers and M A-lines for a 2-D ROI. Improvements to attenuation estimation with the use of the MT method when compared to other gating windows have been discussed by Rosado-Mendez et al (2013). When computing a power spectrum with a Multi-taper estimator, improvement in estimation variance over just a single taper is expected when the spatial extent of the parameter estimation region is constrained (Rosado-Mendez et al, 2013).…”
Section: Theorymentioning
confidence: 99%
“…Improvements to attenuation estimation with the use of the MT method when compared to other gating windows have been discussed by Rosado-Mendez et al (2013). When computing a power spectrum with a Multi-taper estimator, improvement in estimation variance over just a single taper is expected when the spatial extent of the parameter estimation region is constrained (Rosado-Mendez et al, 2013). All array and FFT operations were carried out using the Python library Numpy (Oliphant, 2007).…”
Attenuation estimation and imaging has the potential to be a valuable tool for tissue characterization, particularly for indicating the extent of thermal ablation therapy in the liver. Often the performance of attenuation estimation algorithms is characterized with numerical simulations or tissue mimicking phantoms containing a high scatterer number density (SND). This ensures an ultrasound signal with a Rayleigh distributed envelope and an SNR approaching 1.91. However, biological tissue often fails to exhibit Rayleigh scattering statistics. For example, across 1,647 ROI's in 5 ex vivo bovine livers we find an envelope SNR of 1.10 ± 0.12 when imaged with the VFX 9L4 linear array transducer at a center frequency of 6.0 MHz on a Siemens S2000 scanner. In this article we examine attenuation estimation in numerical phantoms, TM phantoms with variable SND's, and ex vivo bovine liver prior to and following thermal coagulation. We find that reference phantom based attenuation estimation is robust to small deviations from Rayleigh statistics. However, in tissue with low SND, large deviations in envelope SNR from 1.91 lead to subsequently large increases in attenuation estimation variance. At the same time, low SND is not found to be a significant source of bias in the attenuation estimate. For example, we find the standard deviation of attenuation slope estimates increases from 0.07 dB/cm MHz to 0.25 dB/cm MHz as the envelope SNR decreases from 1.78 to 1.01 when estimating attenuation slope in TM phantoms with a large estimation kernel size (16 mm axially by 15 mm laterally). Meanwhile, the bias in the attenuation slope estimates is found to be negligible (< 0.01 dB/cm MHz). We also compare results obtained with reference phantom based attenuation estimates in ex vivo bovine liver and thermally coagulated bovine liver.
“…The power spectrum at a particular time point t 0 is given by an average over K tapers and M A-lines for a 2-D ROI. Improvements to attenuation estimation with the use of the MT method when compared to other gating windows have been discussed by Rosado-Mendez et al (2013). When computing a power spectrum with a Multi-taper estimator, improvement in estimation variance over just a single taper is expected when the spatial extent of the parameter estimation region is constrained (Rosado-Mendez et al, 2013).…”
Section: Theorymentioning
confidence: 99%
“…Improvements to attenuation estimation with the use of the MT method when compared to other gating windows have been discussed by Rosado-Mendez et al (2013). When computing a power spectrum with a Multi-taper estimator, improvement in estimation variance over just a single taper is expected when the spatial extent of the parameter estimation region is constrained (Rosado-Mendez et al, 2013). All array and FFT operations were carried out using the Python library Numpy (Oliphant, 2007).…”
Attenuation estimation and imaging has the potential to be a valuable tool for tissue characterization, particularly for indicating the extent of thermal ablation therapy in the liver. Often the performance of attenuation estimation algorithms is characterized with numerical simulations or tissue mimicking phantoms containing a high scatterer number density (SND). This ensures an ultrasound signal with a Rayleigh distributed envelope and an SNR approaching 1.91. However, biological tissue often fails to exhibit Rayleigh scattering statistics. For example, across 1,647 ROI's in 5 ex vivo bovine livers we find an envelope SNR of 1.10 ± 0.12 when imaged with the VFX 9L4 linear array transducer at a center frequency of 6.0 MHz on a Siemens S2000 scanner. In this article we examine attenuation estimation in numerical phantoms, TM phantoms with variable SND's, and ex vivo bovine liver prior to and following thermal coagulation. We find that reference phantom based attenuation estimation is robust to small deviations from Rayleigh statistics. However, in tissue with low SND, large deviations in envelope SNR from 1.91 lead to subsequently large increases in attenuation estimation variance. At the same time, low SND is not found to be a significant source of bias in the attenuation estimate. For example, we find the standard deviation of attenuation slope estimates increases from 0.07 dB/cm MHz to 0.25 dB/cm MHz as the envelope SNR decreases from 1.78 to 1.01 when estimating attenuation slope in TM phantoms with a large estimation kernel size (16 mm axially by 15 mm laterally). Meanwhile, the bias in the attenuation slope estimates is found to be negligible (< 0.01 dB/cm MHz). We also compare results obtained with reference phantom based attenuation estimates in ex vivo bovine liver and thermally coagulated bovine liver.
“…A recent paper suggests using the axial and lateral correlation lengths to determine window sizes based upon the chosen PS estimation method. [11] For echo signals from cervix tissue in this study, an axial correlation length of approximately 200 μm and a lateral scan line separation of 3 scan lines provided uncorrelated data. With these correlation lengths, relying upon the use of the multitaper PSD estimation method, a PS estimation region of 4x4 mm and a parameter estimation region of 8 mm (length) were deemed sufficient for subsequent analysis.…”
Quantitative ultrasound has been investigated as a tool for monitoring cervical changes that might result in preterm birth. Backscatter parameters, specifically attenuation and the backscattered power loss (BSPL), appear to be two important parameters. Sources of potential variability such as the angle of the beam interrogating the cervix, the region within the cervix, the number of previous births, and the state of ripening, have not been systematically examined, but could contribute to bias and variance in parameter estimates. Results presented here show that attenuation was affected by angle of interrogation, region in the cervix, parity, and ripened state. BSPL in the nonpregnant cervix was affected only by cervical region.
“…Using correlation measurements of intensity (squared envelope) data as described by Rosado-Mendez et al [3], the corresponding pulse length was estimated at 0.25mm and the beam width at 0.74mm, spanning 6 adjacent acoustic lines B. Generalized Spectrum Analysis Two general approaches for the detection of coherent scattering from the periodically arranged fibers in the phantom were investigated: the Generalized Spectrum and the Singular Spectrum Analysis. The Generalized Spectrum (GS) S(f i ,f j ) is the expected value of the correlation of the Fourier transform Y(f) of a segment of RF signal y(t) at frequencies f i and f j :…”
Section: A Phantom Scanningmentioning
confidence: 99%
“…To create parametric images based on periodicity features of the GS, a parameter estimation region is moved across a plane of RF echo data and one parameter estimate is obtained at each location of the region [3]. Ideally, the parameter estimation region, which includes segments of adjacent RF echo signals, should be small to provide good spatial resolution.…”
Quantifying features related to acoustic scatterer periodicity can provide useful information to monitor tissue structural changes, but their detection is hindered by apparent coherence from random scatterers. This work compares the use a multitaper Generalized Spectrum (mtGS) to single-taper and time-average approaches (stGS and taGS, respectively) and to the Singular Spectrum Analysis (SSA) for detecting periodicity in backscattered echo signals when reducing the size of the parameter estimation region.A phantom with diffuse scatterers and an array of 0.1mm-diameter nylon fibers 0.4mm apart was scanned with a Siemens S2000 system using a linear array transducer. Radiofrequency (RF) echo signals from the fiber plane were obtained and Generalized Spectrum (GS) estimates were made either by stGS, taGS or mtGS with Discrete Prolate Spheroidal Sequences. Spectral components corresponding to periodic structures were identified by peaks in the GS Collapsed Average. SSA was implemented by obtaining eigenvalues and eigenvectors of the autocovariance matrix of signal segments. The periodic components of envelope signals were reconstructed using pairs of eigenvectors with similar eigenvalues. The frequency of the periodic component was estimated from the maximum value of its power spectrum. Histograms of frequency components detected by each method were constructed. The conspicuity of the 1.9MHz peak (corresponding to the fiber spacing) was measured as the size of the parameter estimation region was reduced axially and laterally from 20 to 2 correlation lengths.The mtGS improves detection of the relevant frequency components (1.9MHz and its harmonic) compared to stGS, taGSm and SSA by increasing their conspicuity over spurious components. This method also provided the minimum parameter estimation region size (8 pulse lengths axially, 6 uncorrelated scanlines laterally) viable for detection of periodic features.
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