“…As we have outlined above, patterns of genomic and proteomic alterations can define tissue- and histological-specific differences in underlying biology and can be used to define molecularly distinct subtypes of cancer, including breast and ovarian cancer [ 2 , 3 , 11 , 23 , 97 , 118 , 119 , 120 , 136 , 153 , 154 , 155 ]. These genomic and proteomic patterns can identify oncogenic mechanisms that contribute to disease development, progression and in some instance can serve as therapeutic targets or markers of therapeutic response [ 10 , 62 , 63 , 99 , 102 , 113 , 126 , 128 , 129 , 135 , 137 , 142 , 156 , 157 , 158 , 159 , 160 , 161 , 162 , 163 , 164 , 165 , 166 , 167 , 168 , 169 , 170 , 171 , 172 ]. However, single platform analyses can be limited in their ability to visualize altered signaling networks and oncogenic processes.…”