Approximately 2-3% of adult patients with acute myeloid leukemia harbor a rearrangement of RPN1 (at 3q21) and EVI1 (at 3q26.2) as inv(3)(q21q26.2), t(3;3)(q21;q26.2), or ins(3;3)(q26.2;q21q26.2). The most recent World Health Organization (WHO) classification has designated AML with inv(3) or t(3;3) and associated RPN1/EVI1 fusion, as a distinct AML subgroup associated with an unfavorable prognosis. We have created a dual color, double fusion fluorescence in situ hybridization (D-FISH) assay to detect fusion of the RPN1 and EVI1 genes. A blinded investigation was performed using 30 normal bone marrow samples and 51 bone marrow samples from 17 patients with inv(3)(q21q26.2), 11 patients with t(3;3)(q21;q26.2), and one patient with ins(3;3)(q26.2;q21q26.2) previously defined by chromosome analysis. The unblinded results indicated abnormal RPN1/EVI1 fusion results in 30 (97%) of 31 samples from the inv(3)(q21q26.2) group including seven bone marrow samples for which chromosome analysis was unsuccessful or failed to detect an inv(3)(q21q26.2). Abnormal FISH results were detected in 14 (88%) of 16 samples with t(3;3)(q21;q26.2) and in the sole sample with an ins(3;3)(q26.2;q21q26.2). All 30 negative controls were normal and were used to establish a normal cutoff of 0.6% for the typical abnormal D-FISH signal pattern. Overall, this D-FISH assay was more accurate than chromosome analysis and based on the normal cutoff of 0.6%, this assay can be used for minimal residual disease detection and disease monitoring in patients with RPN1/ EVI1 fusion. Am. J. Hematol. 85:569-574, 2010. V V C 2010 Wiley-Liss, Inc.
IntroductionRearrangements of the long arm of chromosome 3, involving the 3q21 and 3q26.2 regions, have been observed in de novo acute myeloid leukemia (AML), AML with antecedent myelodysplastic syndrome and aggressive subtypes of myelodysplasia (MDS) [1][2][3][4]. Although several nonrandom, recurrent translocations involving 3q21 and 3q26.2 have been described, the most common rearrangements involve simultaneous disruption of 3q21 and 3q26.2 as the result of inv(3)(q21q26.2) [inv(3)], t(3;3)(q21;q26.2) [t(3;3)], and less commonly ins(3;3)(q26.2;q21q26.2) [ins(3;3)] [5][6][7][8][9]. The end result of each of these rearrangements is the juxtaposition of the RPN1 gene at 3q21 with the EVI1 (MECOM) gene at 3q26. 2 [10].EVI1 is a proto-oncogene encoding a DNA-binding zincfinger protein which regulates various intracellular signaling pathways as a transcription activator [11][12][13]. While the EVI1 protein is expressed at low levels in normal hematopoietic cells, inv(3), t(3;3) or ins(3;3) results in the juxtaposition of the promoter for the house-keeping gene RPN1 placed upstream of the EVI1 gene, resulting in marked over expression of EVI1. Breakpoints in the EVI1 gene region are scattered over several hundred kilobases (kb) with the t(3;3) breakpoints and inv(3) breakpoints located 5