2021
DOI: 10.3389/fimmu.2021.779747
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Systems Immunology Analyses Following Porcine Respiratory and Reproductive Syndrome Virus Infection and Vaccination

Abstract: This study was initiated to better understand the nature of innate immune responses and the relatively weak and delayed immune response against porcine reproductive and respiratory syndrome virus (PRRSV). Following modified live virus (MLV) vaccination or infection with two PRRSV-2 strains, we analyzed the transcriptome of peripheral blood mononuclear cells collected before and at three and seven days after vaccination or infection. We used blood transcriptional modules (BTMs)-based gene set enrichment analyse… Show more

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Cited by 11 publications
(12 citation statements)
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“…Differential gene expression was enriched and ranked using GSEA. For ranking, the negative natural logarithm of the P-values with genes upregulated (positive log2-fold change values) and the natural logarithm of the P-values with genes downregulated were calculated [ 46 ]. Significant gene perturbations (FDRqvalue<0.05) were presented using BTM [ 20 ] adapted to the pig genome by replacing human genes with their pig homologs [ 47 ].…”
Section: Methodsmentioning
confidence: 99%
“…Differential gene expression was enriched and ranked using GSEA. For ranking, the negative natural logarithm of the P-values with genes upregulated (positive log2-fold change values) and the natural logarithm of the P-values with genes downregulated were calculated [ 46 ]. Significant gene perturbations (FDRqvalue<0.05) were presented using BTM [ 20 ] adapted to the pig genome by replacing human genes with their pig homologs [ 47 ].…”
Section: Methodsmentioning
confidence: 99%
“…As the induction of a humoral immune response has not been very successful in the control of these two diseases, an understanding of cellular immunity against these viruses has become a research hotspot in order to dissect the mechanism of immune protection and develop more effective vaccines. Numerous studies showed that PRRSV infection or attenuated modified live virus (MLV) vaccination induced a relatively weak and delayed cellular immune response, where increased cytotoxic CD8 T cells and CD4 + CD8 + T cells were detected at 4-5 weeks after infection or immunization [18,19], while IFN-γ-producing cells were occasionally detected as early as 2-3 weeks in individual animals after infection [20,21]. Although infection with the highly pathogenic PRRSV (HP PRRSV) strain was shown to cause the depletion/altered recruitment of Th cells, γδ T cells and B cells [22], IFN-γ-producing cells have been detected at 3 weeks post-infection [23].…”
Section: Introductionmentioning
confidence: 99%
“…Differential gene expression was enriched and ranked using GSEA. For ranking, the negative natural logarithm of the P-values with genes upregulated (positive log2-fold change values) and the natural logarithm of the P-values with genes downregulated were calculated (Bocard et al, 2021). Significant gene perturbations (FDRqvalue<0.05) were presented using BTM (Li et al, 2014) adapted to the pig genome by replacing human genes with their pig homologs (Matthijs et al, 2019).…”
Section: Methodsmentioning
confidence: 99%