In the Hilbert space formulation of quantum mechanics, ideal measurements of physical variables are discussed using the spectral theory of Hermitian operators and the corresponding projector-valued measures (PVMs). However, more general types of measurements require the treatment in terms of positive-operator-valued measures (POVMs). In the Hamiltonian formulation of quantum mechanics, canonical coordinates are related to PVM. In this paper the results of an analysis of various aspects of applications of POVMs in the Hamiltonian formulation are reported. Several properties of state parameters and quantum observables given by POVMs or represented in an overcomplete basis, including the general Hamiltonian treatment of the Neumark extension, are presented. An analysis of the phase operator, given by the corresponding POVMs, in the Hilbert space and the Hamiltonian frameworks is also given.