Tentoxin, a natural cyclic tetrapeptide produced by phytopathogenic fungi from the Alternaria species affects the catalytic function of the chloroplast F1-ATPase in certain sensitive species of plants. In this study, we show that the uncompetitive inhibitor tentoxin binds to the ␣-interface of the chloroplast F1-ATPase in a cleft localized at Asp-83. Most of the binding site is located on the noncatalytic ␣-subunit. The crystal structure of the tentoxininhibited CF1-complex suggests that the inhibitor is hydrogen bonded to Asp-83 in the catalytic -subunit but forms hydrophobic contacts with residues Ile-63, Leu-65, Val-75, Tyr-237, Leu-238, and Met-274 in the adjacent ␣-subunit. Except for minor changes around the tentoxin-binding site, the structure of the chloroplast ␣ 3  3 -core complex is the same as that determined with the native chloroplast ATPase. Tentoxin seems to act by inhibiting intersubunit contacts at the ␣-interface and by blocking the interconversion of binding sites in the catalytic mechanism.]} produced by various phytopathogenic fungi from the Alternaria species, acts as a selective energy transfer inhibitor of the chloroplast F 1 -ATPase in certain sensitive species of plants but shows no effect on the homologous mitochondrial or bacterial enzymes. In the soluble, isolated CF 1 -complex, the phytopathogen inhibits ATP hydrolysis, whereas both catalytic reactions, ATP synthesis and hydrolysis, are blocked in the membrane-bound CF 1 . Binding studies indicate that the inhibition of the ATPase by tentoxin is uncompetitive with nucleotides (1-3) and suggest that the phytopathogen prevents the cooperative release of tightly bound nucleotides from the enzyme (4). However, the precise number and location of the tentoxin-binding site(s) and the mechanism by which the phytopathogen affects the catalytic activity of the chloroplast ATPase are still unknown. Labeling studies suggest at least one high-affinity inhibitory binding site (K d Ͻ 10 Ϫ8 M), probably located at the ␣-interface, and 1-2 low-affinity binding sites (K d Ͼ 10 Ϫ6 M), which cause a reactivation of the enzyme (5-6). Analysis of tentoxin-sensitive and -resistant Nicotiana species indicated that residue Asp-83 located at the interface of the N-terminal -barrel domains in the ␣-and -subunits is crucial for tentoxin binding and͞or sensitivity (7). Substitution of this residue by glutamate, alanine, or leucine caused tentoxin resistance (8), whereas substitution of the native glutamate in the tentoxin-resistant Chlamydomonas reinhardtii F 1 -ATPase by aspartate induced tentoxin sensitivity (9). On the other hand, tentoxin-resistant F 1 -ATPases from thermophilic Bacillus PS3 and from E. coli (10) contain aspartate in the equivalent position of the -subunit as well. Hence, additional structural elements in the ␣-and͞or -subunits are probably required for tentoxin binding and sensitivity in F 1 -ATPases. More detailed information on these critical residues was obtained from the crystal structure of the native spinach chloroplast F ...