We examined the synthesis and turnover of individual proteins in the Saccharomyces cerevisiae cell cycle. Proteins were pulse-labeled with radioactive isotope (32S or 14C) in cells at discrete cycle stages and then resolved on two-dimensional gels and analyzed by a semiautomatic procedure for quantitating gel electropherogram-autoradiographs. The cells were obtained by one of three methods: (i) isolation of synchronous subpopulations of growing cells by zonal centrifugation; (ii) fractionation of pulse-labeled steady-state cultures according to cell age; and (iii) synchronization of cells with the mating pheromone, a-factor. In confirmation of previous studies, we found that the histones H4, H2A, and H2B were synthesized almost exclusively in the late Gl and early S phases. In addition, we identified eight proteins whose rates of synthesis were modulated in the cell cycle, and nine proteins (of which five, which may well be related, were unstable, with half-lives of 10 to 15 min) that might be regulated in the cell cycle by periodic synthesis, modification, or degradation. Based on the time of maximal labeling in the cell cycle and on experiments with a-factor and hydroxyurea, we assigned the cell cycle proteins to two classes: proteins in class I were labeled principally in early Gl phase and at a late stage of the cycle, whereas those in class II were primarily synthesized at times ranging from late Gl to mid S phase. At least one major control point for the cell cycle proteins occurred between "start" and early S phase. A set of stress-responsive proteins was also identified and analyzed. The rates of synthesis of these proteins were affected by certain perturbations that resulted during selection of synchronous cell populations and by heat shock.Understanding the molecular basis of the many cellular events which occur at discrete stages of the progress of cells from one division to the next is the central focus of research on the cell cycle. Saccharomyces cerevisiae has been developed as a model organism for studying eucaryotic cell cycle control (15-17, 34, 43). Genetic analysis has generated some of the basic ideas about functional pathways in the cell cycle and also provided material for further biochemical studies.In this paper, we report on a search for cell cycle-regulated proteins in S. cerevisiae. In an earlier analysis of the patterns of synthesis of S.cerevisiae proteins in the cell cycle (8-10, 22), almost 200 proteins were examined quantitatively after being separated on two-dimensional (2-t Present address: