Serotonin N-acetyltransferase (arylalkylamine N-acetyltransferase (AANAT)) catalyzes the reaction of serotonin (or tryptamine) with acetyl-CoA to form N-acetylserotonin (or N-acetyltryptamine) and is responsible for the melatonin circadian rhythm in vertebrates. This study evaluates a series of indoleamine analogs as alternate substrates of AANAT. 3-Indolepropylamine and 3-indolebutylamine were chemically synthesized and found to be processed by AANAT, although 20-and 60-fold less efficiently compared with the natural substrate serotonin, respectively. Racemic ␣-methyltryptamine and N -methyltryptamine were also shown to be substrates for AANAT, again with reduced k cat and k cat /K m compared with serotonin. The enzyme did exhibit ϳ9:1 stereoselectivity for the R-enantiomer of ␣-methyltryptamine versus the S-enantiomer. By measuring the enzymatic rates versus increasing buffer microviscosity, it was demonstrated that diffusional release of product is most likely the principal rate-determining step for the enzymatic transformation of tryptamine (which has similar k cat and k cat /K m compared with serotonin). Analysis of k cat and k cat /K m versus pH for the poor substrate N -methyltryptamine showed that an ionizable group on the enzyme with pK a ϳ 7, required to be in its deprotonated form, may be important in catalysis. The ␣-methyltryptamine analog ␣-trifluoromethyltryptamine was not processed by the enzyme, but served as a modest competitive inhibitor. Taken together with the pH-rate analysis, these results favor a model in which the serotonin substrate binds to the enzyme as the positively charged ammonium salt, and nucleophilicity of the amine is important in enzyme-catalyzed acetyl transfer.