An original design and synthesis of fluorescent ligands for melatonin receptor studies is presented and consists in the fusion of the endogenous ligand with the fluorescent BODIPY core. Probes I−IV show high affinities for MT 1 and MT 2 melatonin receptors and exhibit fluorescence properties compatible with cell observation.KEYWORDS: GPCRs, melatonin, fluorescence, molecular probes, BODIPY F luorescence is one of the most sensitive spectroscopic methods and many fluorescent ligands have been reported for locating G-protein-coupled receptors (GPCRs), for studying ligand/receptor interactions, and more generally for better understanding their pharmacology and physiological process. 1−4 The history of fluorescent ligands is linked to the development of commercially available fluorophores. Organic dyes have been designed and synthesized to exhibit excitation and emission wavelengths, which are compatible with biological observation and are associated to ligands in conjugation reactions. The addition of such a distinct fluorescent molecule may alter both the chemical (while remaining within a spectrum of lipophilicity to hydrophilicity) and pharmacological (affinity, functionality, etc.) properties of the resulting fluorescent ligand that will modify its cellular behavior.The melatonin receptors MT 1 and MT 2 are members of the GPCR family. They are involved in the regulation of the circadian rhythm and seasonal functions in mammals. They are also implicated in many biological processes ranging from antiinflammatory to antioxidant effects including anti-Parkinson effects 5,6 and were recently reported as part of the mechanism of action of the antidepressant agomelatine, an MT 1 and MT 2 receptor agonist and 5-HT 2C antagonist. 7,8 Despite the discovery of the high affinity agonist and nonselective 2-[ 125 I]-MLT radioligand 9 research on the pharmacology and the functionality/physiological impact of melatonin receptors suffers from the lack of selective probes for these receptors due to their very low level of expression. Moreover, the main disadvantages of this method are the radioactive hazards and the limitations of studying the molecular dynamics of receptor activation. To offer alternative probes, we have developed a concept aiming at using the aromatic core of an endogenous ligand as the source of fluorescence after slight chemical modification and without loss of biological activity. Herein, we report the design and synthesis of fluorescent ligands for melatonin receptor studies thanks to the fusion of the endogenous ligand with the fluorescent BODIPY core.Melatonin presents in its chemical structure an indole ring possessing fluorescent properties that are unfortunately inappropriate for biological analysis due to interferences from other biochromophores (such as tryptophan). 10,11 Our expertise on the melatonin structure/activity relationship 12−16 prompts us to investigate the extension of the π-conjugation of the indole scaffold at position C-2 in order to obtain biologically compatible photophys...