Glutamine
(Gln) residues located at N-termini undergo spontaneous
intramolecular cyclization, causing the formation of pyroglutamic
acid (pGlu) residues. pGlu residues have been detected at the N-termini
in various peptides and proteins. The formation of pGlu residues during
the fermentation and purification processes of antibody drugs is one
of the concerns in the design and formulation of these drugs and has
been reported to proceed rapidly in a phosphate buffer. In this study,
we have examined the phosphate-catalyzed mechanisms of the pGlu residue
formation from N-terminal Gln residues via quantum chemical calculations
using B3LYP density functional methods. Single-point energies were
calculated using the second-order Møller–Plesset perturbation
theory. We performed the calculations for the model compound in which
an uncharged N-terminal Gln residue is capped with a methyl amino
group on the C-terminal. The activation energy of the formation of
pGlu residues was calculated as 83.8 kJ mol–1, which
was lower than that of the typical nonenzymatic reaction of amino
acid residues. In addition, the computational results indicate that
the flexibility of the main and side chains in N-terminal Gln residues
was necessary for the formation of pGlu residues to proceed. In the
obtained pathway, inorganic phosphate species act as the catalyst
by mediating the proton transfer.