The Ca 2+ -sensor protein S100A1 was recently shown to bind in vitro to synapsins, a family of synaptic vesicle phosphoproteins involved in the regulation of neurotransmitter release. In this paper, we analyzed the distribution of S100A1 and synapsin I in the CNS and investigated the effects of the S100A1/synapsin binding on the synapsin functional properties. Subcellular fractionation of rat brain homogenate revealed that S100A1 is present in the soluble fraction of isolated nerve endings. Confocal laser scanning microscopy and immunogold immunocytochemistry demonstrated that S100A1 and synapsin codistribute in a subpopulation (5-20%) of nerve terminals in the mouse cerebral and cerebellar cortices. By forming heterocomplexes with either dephosphorylated or phosphorylated synapsin I, S100A1 caused a dose-and Ca 2+ -dependent inhibition of synapsininduced F-actin bundling and abolished synapsin dimerization, without affecting the binding of synapsin to F-actin, G-actin or synaptic vesicles. These data indicate that: (i) synapsins and S100A1 can interact in the nerve terminals where they are coexpresssed; (ii) S100A1 is unable to bind to SV-associated synapsin I and may function as a cytoplasmic store of monomeric synapsin I; and (iii) synapsin dimerization and interaction with S100A1 are mutually exclusive, suggesting an involvement of S100A1 in the Ca S100 is a multigenic family of Ca 2+ -modulated proteins of the EF-hand type expressed in a rather cell-specific manner and implicated in the regulation of a variety of cellular activities via interaction with effector proteins (Schäfer and Heizmann 1996;Donato 1999). S100A1 is expressed abundantly in cardiac and skeletal muscle cells and in some neuronal populations Kato 1987, 1988;Donato et al. 1989;Rambotti et al. 1999;Arcuri et al. 2002). The protein has been implicated in the regulation of the dynamics of microtubule and type III intermediate filaments (Donato 1988;Bianchi et al. 1993;Garbuglia et al. 1996;Sorci et al. 2000), the release of Ca 2+ from intracellular stores via interaction with the ryanodine receptor (Fanò et al. 1989;Treves et al. 1997), the activity of the myosin-associated protein kinase twitchin and the interaction of the giant sarcomeric kinase, titin, with F-actin (Heierhorst et al. 1996;Yamasaki et al. 2001;Du et al. 2002). Recently, S100A1 has been shown to interact with synapsins in vitro (Heierhorst et al. 1999).Synapsins I and II are neuron-specific proteins that anchor synaptic vesicles (SV) to F-actin in nerve terminals and regulate SV availability for exocytosis in a phosphorylationdependent fashion (Bähler and Greengard 1987;Benfenati et al. 1992aBenfenati et al. , 1993bCeccaldi et al. 1995;Chi et al. 2001Chi et al. , 2003. These proteins have been shown to be crucial for the regulation of neurotransmitter release and during synaptogenesis (see Greengard et al. 1993;Hilfiker et al. 1999; for Received December 23, 2003; revised manuscript received January 26, 2004; accepted January 30, 2004. Address correspondence an...