SecY, a central component of the membrane-embedded sector of protein translocase, contains six cytosolic domains. Here, we examined the importance of the C-terminal cytosolic region of SecY by systematically shortening the C-terminal end and examining the functional consequences of these mutations in vivo and in vitro. It was indicated that the C-terminal five residues are dispensable without any appreciable functional defects in SecY. Mutants missing the C-terminal six to seven residues were partially compromised, especially at low temperature or in the absence of SecG. In vitro analyses indicated that the initial phase of the translocation reaction, in which the signal sequence region of the preprotein is inserted into the membrane, was affected by the lack of the C-terminal residues. SecA binding was normal, but SecA insertion in response to ATP and a preprotein was impaired. It is suggested that the C-terminal SecY residues are required for SecA-dependent translocation initiation.Translocation of newly synthesized Escherichia coli proteins from the cytosol across the cytoplasmic membrane is facilitated by concerted actions of the SecA ATPase and the SecYEG integral membrane protein complex (for reviews, see references 14 and 22). Translocation is initiated by membrane insertion of the signal peptide and the following mature segment, leading to periplasmic exposure of the leader peptidase cleavage site. While initiation is triggered by ATP binding to SecA, continuation of translocation requires repeated hydrolysis cycles of ATP and/or the proton motive force (PMF) across the membrane. These processes appear to be closely related to the insertion/deinsertion cycle of SecA (5, 6). In this cycle, an ATP-and preprotein-dependent conformational change of the membrane-bound form of SecA results in its insertion into the membrane, which is followed by ATP hydrolysis-dependent release of the preprotein and deinsertion of SecA. These dynamic functions of SecA occur in its close interaction with the SecYEG components (5,15,22).SecY is the central subunit of the SecYEG complex and contains 10 transmembrane segments (TM1 to TM10), five periplasmic regions (P1 to P5), and six cytosolic domains (C1 to C6). The SecYEG complex is believed to provide a channellike pathway for protein translocation, probably by its oligomeric superassembly (4, 13). We isolated and characterized a number of cold-sensitive secY mutants in which protein export and cell growth were retarded at 20°C (22). In vivo and in vitro studies using these and the dominant-negative secY mutations suggested that the C-terminal cytosolic domains, C5 and C6, are particularly important for SecY functions (21, 27). Mutations in these domains significantly compromise the SecA-activating functions of SecY (33). In particular, a mutation (secY205) in C6 that changed Tyr429 (the 15th residue from the C terminus) to Asp was found to impair the SecA insertion reaction (15).To further assess the importance of the C-terminal residues of SecY, we carried out systematic stu...