MARTe is a modular framework for real-time control aspects. At present time there are several MARTe systems under development at Frascati Tokamak Upgrade (Boncagni et al. in First steps in the FTU migration towards a modular and distributed real time control architecture based on MARTe and RTNet, 2010) such as the LH power percentage system, the gas puffing control system, the realtime ODIN plasma equilibrium reconstruction system and the position/current feedback control system (in a design phase) (Boncagni et al. in J Fusion Eng Design). The realtime reconstruction of magnetic flux in FTU tokamak is an important issue to estimate some quantities that can be use to control the plasma. This paper addresses the validation of real-time implementation of that task on MARTe.