Gill health is fundamental to the success of finfish aquaculture. These delicate organs are responsible for gas exchange, acid-base balance, waste excretion and osmoregulation, yet are constantly exposed to a variety of microorganisms and environmental insults which can result in various gill diseases (Evans 2005, Mitchell & Rodger 2011). While the aetiologies of many disease pathologies are attributed to single pathological agents, the drivers of gill disease can be more complex (Gjessing et al. 2017, Herrero et al. 2018). A multifactorial approach to disease occurrence that considers the impact of environmental factors and microbial community structure, rather than focusing on a single agent, may therefore be a ra