Pharmacophore queries from previously known potent selective A 3 antagonists were generated by Chem-X. These queries were used to search a pharmacophore database of diverse compounds (CNS-Set™). In vitro assays of 186 'hits' yielded over 30 active compounds, for four adenosine receptor subtypes. This search strategy may also be applicable to the discovery of new ligands via receptor homology data.Previous work in the medicinal chemistry of adenosine receptors has resulted in the discovery of potent and selective antagonists for three of the four known receptor subtypes. Alkylxanthine derivatives have served as the basis for numerous, highly-selective ligands for adenosine A i and A 2 A receptors, 1 while the recent development of selective antagonists at the A 3 receptor has relied on more chemically-diverse structural leads. 2 Novel adenosine receptor ligands, including flavonoids, dihydropyridines, tetrahydrobenzo-thiophenones, isoquinolines, and a triazolonaphthyridine and thiazolo-pyrimidine have been identified through the screening of chemical libraries of natural products and various heterocyclic derivatives. 3-5 A unified pharmacophore model based on steric and electrostatic fit of various A 3 receptor antagonists has recently been reported by Moro et al. (1998). 6 Adenosine receptor antagonists having selectivity for A 1 and A 2 A receptors have been under development as anti-arhythmic, 7 renoprotective, 8 anti-Parkinson's, 9 anti-depressant, 10 and cognition enhancing 11 drugs. Recently, chemical leads for A 2 B receptor-selective xanthines, which are predicted to have potential as anti-asthmatic agents, 12,13 have been reported. 14 A 3 receptor agonists and/or antagonists have potential as prophylactic cerebroprotective agents 2 and possibly in modulating immune function and in treating inflammation.We set out to use information derived from these compounds to identify new leads for this medically relevant receptor family and to explore both the pharmacophore relationships within the receptor family and the utility of pharmacophore database queries for the discovery of new leads. One of our specific goals was the discovery of new selective structural leads for the A 3 receptor that may also possess a better bioavailability profile than * Corresponding authors. Tel.: + 1-858-451-7400; fax: + 1-858-451-7401; twebb@chembridge.com.
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Author ManuscriptAuthor Manuscript the known antagonists. The ability to find new structural series from pharmacophore information for an existing bioactive structural series would often be advantageous in the development of new drug leads. An unexpected added benefit of our approach was the discovery of new selective leads for related adenosine receptor subtypes.Reports of the use of pharmacophore searching in three-dimensional databases in order to discover new lead compounds have described several different types of query generation and search strategies. 15 For example, the use of a training set approach, 16 and ...