Photothermal beam deflection technique is used to measure the electronic transport properties of the photovoltaic cell layers at different fabrication stages. The open circuit voltage and short circuit current of the cell is shown to be depend on the transport properties of the window layer material. The photothermal technique is suitable adapted to measure the series resistance, optimum load resistance and photovoltaic efficiency of a three layer (transparent conducting oxide /absorber layer/window layer) compound semiconductor thin film photovoltaic cell. The cell parameter values measured using photothermal technique is in agreement with the electrically measured values. The possibility of efficient and continuous evaluation of the photovoltaic cell during different fabrication stages using photothermal technique is demonstrated.