In this study, the Fourier transform infrared (FTIR) spectrometry and the 13 C-1 H correlation two-dimensional (2D) heteronuclear single-quantum coherence (HSQC) nuclear magnetic resonance (NMR) were introduced to determine the chemical structure of soda alkali lignin (SAL) and Alcell organosolv lignin (AOL), and the relevance between chemical structure and pyrolysis behaviors was evaluated by thermogravimetric analysis (TGA) and pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS). Results showed that the two lignin samples had similar functional groups and S/G ratio, excepting side-chain linkages. SAL was mainly cross-linked by β-β' linkages, while the main linkage within AOL was β-O-4'. This difference proposed that AOL had the worse thermal stability and was easier to be pyrolyzed to phenols than SAL. Herein, the pyrolysis transformation of SAL was always promoted by the increased temperature, whereas the generated phenols from AOL would be redecomposed at high pyrolysis