Monoamine oxidases A and B (MAO A and MAO B)1 (EC 1.4.3.4) are homodimeric flavoenzymes found in the outer membrane of mitochondria of higher eukaryotes and are expressed in a tissue-specific manner (2). These enzymes catalyze the oxidation of primary, secondary, and tertiary amines to imines with concomitant reduction of oxygen to hydrogen peroxide (3). The physiological role of MAO B is to oxidize exogenous and endogenous amines, many of which could mimic the function of neurotransmitters. MAO A oxidizes neurotransmitters such as serotonin, dopamine, and norepinephrine. The structures and mechanisms of these enzymes are currently being investigated. The gene sequences of both MAO A and B from human liver have been determined to be ϳ70% identical (4). A covalently bound FAD cofactor is present in either enzyme, attached to a conserved cysteinyl residue (Cys-406 in MAO A and Cys-397 in MAO B) via an 8␣-S-cysteinyl flavin linkage (Scheme 1). Neither the need for covalent FAD attachment nor the mechanism of covalent incorporation is known. Covalent attachment of flavin cofactors has been found in more than 20 proteins that catalyze a variety of reactions in both prokaryotes and eukaryotes (5). The processes by which flavins are incorporated into proteins appear to differ and to vary in complexity. The simplest known system is the heterodimeric p-cresol-methylhydroxylase from Pseudomonas putida. The enzyme is capable of autoflavinylation in vitro (formation of an 8␣-O-tyrosyl-FAD), requiring only the recombinantly produced purified flavin-binding subunit, a separately expressed and purified heme-containing subunit, and FAD (6). Flavinylation of the mitochondrial matrix enzyme succinate dehydrogenase to form 8␣-N(3)-histidyl-FAD appears to be more complex than that of p-cresol-methylhydroxylase. In vitro studies indicate that flavinylation requires the presence of other factors including molecular chaperones, ATP, and effector molecules such as succinate, fumarate, or malate (7). These additional factors have been suggested to aid in folding the enzyme into a conformation that permits covalent attachment of the flavin (8). Flavinylation of MAO B has been examined by its expression in riboflavin-depleted COS-7 cells (9, 10). Electroporation of these cells with a cDNA encoding MAO B and either FAD or 8␣-hydroxy-FAD results in the production of catalytically active enzyme. In the absence of added FAD, the inactive apoenzyme form of MAO B is produced. These results have been suggested to support a flavinylation mechanism for MAO B involving additional factors that would process and activate the 8␣ position of the flavin prior to covalent attachment (9, 11).Flavin analogues that have modifications in the isoalloxazine ring or in the ribityl side chain have been used extensively to address structure-activity and mechanistic questions in flavoproteins containing non-covalently bound flavin coenzymes (12). The application of this approach to those flavoenzymes containing covalently bound flavins has not been extensively inv...